SMTL ID : 1b57.1

CLASS II FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE IN COMPLEX WITH PHOSPHOGLYCOLOHYDROXAMATE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

7 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.110, H.226, H.264 Ligands: PGH.7 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.110, A:H.226, A:H.264 ZN.2: 5 residues within 4Å: Chain A: H.110, D.144, S.146, E.174, E.181 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.144, A:D.144, A:E.174, A:E.181, H2O.4 ZN.3: 2 residues within 4Å: Chain A: H.91, H.129 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.91, A:H.129, H2O.3, H2O.3 ZN.4: 2 residues within 4Å: Chain A: S.1 Ligands: CL.6 No protein-ligand interaction detected (PLIP) ZN.8: 4 residues within 4Å: Chain B: H.110, H.226, H.264 Ligands: PGH.12 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.110, B:H.226, B:H.264 ZN.9: 5 residues within 4Å: Chain B: H.110, D.144, S.146, E.174, E.181 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.144, B:D.144, B:E.174, B:E.181, H2O.6 ZN.10: 2 residues within 4Å: Chain B: H.91, H.129 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.91, B:H.129, H2O.7, H2O.7

2 x NA: SODIUM ION(Non-functional Binders)

NA.5: 5 residues within 4Å: Chain A: V.225, G.227, G.265, S.267 Ligands: PGH.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.227, A:G.265 Water bridges: A:V.225 NA.11: 5 residues within 4Å: Chain B: V.225, G.227, G.265, S.267 Ligands: PGH.12 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.225, B:G.227 Water bridges: B:V.225

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 2 residues within 4Å: Chain A: S.1 Ligands: ZN.4 Ligand excluded by PLIP

2 x PGH: PHOSPHOGLYCOLOHYDROXAMIC ACID(Non-covalent)

PGH.7: 16 residues within 4Å: Chain A: D.109, H.110, V.225, H.226, G.227, H.264, G.265, G.266, S.267, N.286, I.287, D.288, T.289 Chain B: K.325 Ligands: ZN.1, NA.5 16 PLIP interactions: 14 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:N.35, A:V.225, A:G.227, A:G.265, A:G.266, A:S.267, A:S.267, A:N.286, A:D.288, A:T.289, A:T.289 Water bridges: A:Q.59, A:Q.59, A:D.109, B:K.325 Salt bridges: B:K.325 PGH.12: 15 residues within 4Å: Chain B: D.109, H.110, V.225, H.226, G.227, H.264, G.265, G.266, S.267, N.286, I.287, D.288, T.289 Ligands: ZN.8, NA.11 12 PLIP interactions: 11 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.35, B:V.225, B:G.227, B:G.265, B:G.266, B:S.267, B:S.267, B:N.286, B:D.288, B:T.289, B:T.289 Water bridges: A:K.325

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hall, D.R. et al., The crystal structure of Escherichia coli class II fructose-1, 6-bisphosphate aldolase in complex with phosphoglycolohydroxamate reveals details of mechanism and specificity. J.Mol.Biol. (1999)

Release Date

2000-01-07

Peptides

PROTEIN (FRUCTOSE-BISPHOSPHATE ALDOLASE II): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROTEIN (FRUCTOSE-BISPHOSPHATE ALDOLASE II)

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