SMTL ID : 1bd0.1

ALANINE RACEMASE COMPLEXED WITH ALANINE PHOSPHONATE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x IN5: {1-[(3-HYDROXY-METHYL-5-PHOSPHONOOXY-METHYL-PYRIDIN-4-YLMETHYL)-AMINO]-ETHYL}-PHOSPHONIC ACID(Non-covalent)

IN5.1: 17 residues within 4Å: Chain A: V.37, K.39, Y.43, L.85, R.136, H.166, N.203, S.204, R.219, G.221, I.222, Y.354 Chain B: Y.265, Y.284, C.311, M.312, D.313 23 PLIP interactions: 17 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:L.85, A:Y.354 Hydrogen bonds: A:K.39, A:K.39, A:Y.43, A:R.136, A:R.136, A:H.166, A:N.203, A:S.204, A:R.219, A:G.221, A:I.222, A:Y.354, B:Y.265, B:Y.265, B:Y.284, B:M.312 Water bridges: A:N.203, A:A.205, B:D.313, B:Q.314 pi-Stacking: A:H.166 IN5.2: 17 residues within 4Å: Chain A: Y.265, Y.284, C.311, M.312, D.313 Chain B: V.37, K.39, Y.43, L.85, R.136, H.166, N.203, S.204, R.219, G.221, I.222, Y.354 23 PLIP interactions: 7 interactions with chain A, 16 interactions with chain B Hydrogen bonds: A:Y.265, A:Y.265, A:Y.284, A:M.312, A:D.313, B:K.39, B:Y.43, B:R.136, B:R.136, B:N.203, B:S.204, B:R.219, B:G.221, B:I.222, B:Y.354 Water bridges: A:Y.284, A:D.313, B:A.205, B:Y.354 Hydrophobic interactions: B:V.37, B:L.85, B:Y.354 pi-Stacking: B:H.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stamper, G.F. et al., Reaction of alanine racemase with 1-aminoethylphosphonic acid forms a stable external aldimine. Biochemistry (1998)

Release Date

1998-10-14

Peptides

ALANINE RACEMASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ALANINE RACEMASE

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