SMTL ID : 1bev.3 (3 other biounits)

BOVINE ENTEROVIRUS VG-5-27

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-6-6-6-6-mer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: S.128, T.129, G.130, H.230 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.130 Salt bridges: A:H.230 SO4.3: 3 residues within 4Å: Chain B: N.88, G.146, S.147 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.147, B:S.147 SO4.4: 4 residues within 4Å: Chain E: S.128, T.129, G.130, H.230 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:G.130 Salt bridges: E:H.230 SO4.6: 3 residues within 4Å: Chain F: N.88, G.146, S.147 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:S.147, F:S.147 SO4.7: 4 residues within 4Å: Chain I: S.128, T.129, G.130, H.230 2 PLIP interactions: 2 interactions with chain I Hydrogen bonds: I:G.130 Salt bridges: I:H.230 SO4.9: 3 residues within 4Å: Chain J: N.88, G.146, S.147 2 PLIP interactions: 2 interactions with chain J Hydrogen bonds: J:S.147, J:S.147 SO4.10: 4 residues within 4Å: Chain M: S.128, T.129, G.130, H.230 2 PLIP interactions: 2 interactions with chain M Hydrogen bonds: M:G.130 Salt bridges: M:H.230 SO4.12: 3 residues within 4Å: Chain N: N.88, G.146, S.147 2 PLIP interactions: 2 interactions with chain N Hydrogen bonds: N:S.147, N:S.147 SO4.13: 4 residues within 4Å: Chain Q: S.128, T.129, G.130, H.230 2 PLIP interactions: 2 interactions with chain Q Hydrogen bonds: Q:G.130 Salt bridges: Q:H.230 SO4.15: 3 residues within 4Å: Chain R: N.88, G.146, S.147 2 PLIP interactions: 2 interactions with chain R Hydrogen bonds: R:S.147, R:S.147 SO4.16: 4 residues within 4Å: Chain U: S.128, T.129, G.130, H.230 2 PLIP interactions: 2 interactions with chain U Hydrogen bonds: U:G.130 Salt bridges: U:H.230 SO4.18: 3 residues within 4Å: Chain V: N.88, G.146, S.147 2 PLIP interactions: 2 interactions with chain V Hydrogen bonds: V:S.147, V:S.147

6 x MYR: MYRISTIC ACID(Non-covalent)

MYR.2: 10 residues within 4Å: Chain A: I.97, D.98, F.99, R.100, Y.145, F.180, V.182, M.185, Y.191, N.215 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.97, A:F.99, A:F.99, A:Y.145, A:Y.145, A:F.180, A:V.182, A:V.182, A:Y.191 Hydrogen bonds: A:F.99, A:N.215 Salt bridges: A:R.100 MYR.5: 10 residues within 4Å: Chain E: I.97, D.98, F.99, R.100, Y.145, F.180, V.182, M.185, Y.191, N.215 12 PLIP interactions: 12 interactions with chain E Hydrophobic interactions: E:I.97, E:F.99, E:F.99, E:Y.145, E:Y.145, E:F.180, E:V.182, E:V.182, E:Y.191 Hydrogen bonds: E:F.99, E:N.215 Salt bridges: E:R.100 MYR.8: 10 residues within 4Å: Chain I: I.97, D.98, F.99, R.100, Y.145, F.180, V.182, M.185, Y.191, N.215 13 PLIP interactions: 13 interactions with chain I Hydrophobic interactions: I:I.97, I:F.99, I:F.99, I:Y.145, I:Y.145, I:F.180, I:V.182, I:V.182, I:Y.191 Hydrogen bonds: I:D.98, I:F.99, I:N.215 Salt bridges: I:R.100 MYR.11: 10 residues within 4Å: Chain M: I.97, D.98, F.99, R.100, Y.145, F.180, V.182, M.185, Y.191, N.215 12 PLIP interactions: 12 interactions with chain M Hydrophobic interactions: M:I.97, M:F.99, M:F.99, M:Y.145, M:Y.145, M:F.180, M:V.182, M:V.182, M:Y.191 Hydrogen bonds: M:F.99, M:N.215 Salt bridges: M:R.100 MYR.14: 10 residues within 4Å: Chain Q: I.97, D.98, F.99, R.100, Y.145, F.180, V.182, M.185, Y.191, N.215 13 PLIP interactions: 13 interactions with chain Q Hydrophobic interactions: Q:I.97, Q:F.99, Q:F.99, Q:Y.145, Q:Y.145, Q:F.180, Q:V.182, Q:V.182, Q:Y.191 Hydrogen bonds: Q:D.98, Q:F.99, Q:N.215 Salt bridges: Q:R.100 MYR.17: 10 residues within 4Å: Chain U: I.97, D.98, F.99, R.100, Y.145, F.180, V.182, M.185, Y.191, N.215 13 PLIP interactions: 13 interactions with chain U Hydrophobic interactions: U:I.97, U:F.99, U:F.99, U:Y.145, U:Y.145, U:F.180, U:V.182, U:V.182, U:Y.191 Hydrogen bonds: U:D.98, U:F.99, U:N.215 Salt bridges: U:R.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smyth, M. et al., Implications for viral uncoating from the structure of bovine enterovirus. Nat.Struct.Biol. (1995)

Release Date

1998-09-16

Peptides

BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4: AEIMQU
BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4: BFJNRV
BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4: CGKOSW
BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4: DHLPTX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

E
1

I
1

M
1

Q
1

U
1

B
2

F
2

J
2

N
2

R
2

V
2

C
3

G
3

K
3

O
3

S
3

W
3

D
4

H
4

L
4

P
4

T
4

X
4

BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4

BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4

BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4

BOVINE ENTEROVIRUS COAT PROTEINS VP1 TO VP4

Related Entries With Identical Sequence