- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-pentamer
- Ligands
- 7 x BGC- GAL- GLA: alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
- 5 x GAL- GLA: alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose(Non-covalent)
GAL-GLA.2: 7 residues within 4Å:- Chain A: N.32, R.33, W.34, N.35
- Chain B: Y.14, D.18, W.34
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:W.34, A:N.35, A:N.35, B:D.18
GAL-GLA.4: 7 residues within 4Å:- Chain B: N.32, R.33, W.34, N.35
- Chain C: Y.14, D.18, W.34
5 PLIP interactions:2 interactions with chain C, 3 interactions with chain B- Hydrogen bonds: C:Y.14, C:D.18, B:W.34, B:N.35, B:N.35
GAL-GLA.6: 7 residues within 4Å:- Chain C: N.32, R.33, W.34, N.35
- Chain D: Y.14, D.18, W.34
5 PLIP interactions:2 interactions with chain D, 3 interactions with chain C- Hydrogen bonds: D:Y.14, D:D.18, C:W.34, C:N.35, C:N.35
GAL-GLA.9: 6 residues within 4Å:- Chain D: N.32, R.33, W.34, N.35
- Chain E: D.18, W.34
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain E- Hydrogen bonds: D:W.34, D:N.35, D:N.35, E:D.18
GAL-GLA.11: 7 residues within 4Å:- Chain A: Y.14, D.18, W.34
- Chain E: N.32, R.33, W.34, N.35
5 PLIP interactions:1 interactions with chain A, 4 interactions with chain E- Hydrogen bonds: A:D.18, E:R.33, E:W.34, E:N.35, E:N.35
- 3 x GAL: beta-D-galactopyranose(Non-covalent)
GAL.13: 6 residues within 4Å:- Chain A: N.15, T.19, T.21, E.28, F.30, G.60
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:N.15, A:E.28
- Water bridges: A:D.17, A:T.19, A:E.28
GAL.14: 7 residues within 4Å:- Chain B: K.13, N.15, T.19, T.21, E.28, F.30, G.60
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:K.13, B:N.15, B:T.19, B:E.28, B:G.60
- Water bridges: B:K.13, B:D.17, B:T.19
GAL.15: 6 residues within 4Å:- Chain D: K.13, N.15, T.21, E.28, F.30, G.60
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:K.13, D:T.21, D:E.28
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ling, H. et al., Structure of the shiga-like toxin I B-pentamer complexed with an analogue of its receptor Gb3. Biochemistry (1998)
- Release Date
- 1999-02-02
- Peptides
- SHIGA-LIKE TOXIN I B SUBUNIT: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
KB
LC
MD
NE
O
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-pentamer
- Ligands
- 7 x BGC- GAL- GLA: alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
- 5 x GAL- GLA: alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose(Non-covalent)
- 3 x GAL: beta-D-galactopyranose(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ling, H. et al., Structure of the shiga-like toxin I B-pentamer complexed with an analogue of its receptor Gb3. Biochemistry (1998)
- Release Date
- 1999-02-02
- Peptides
- SHIGA-LIKE TOXIN I B SUBUNIT: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
KB
LC
MD
NE
O