SMTL ID : 1c7n.2 (3 other biounits)

CRYSTAL STRUCTURE OF CYSTALYSIN FROM TREPONEMA DENTICOLA CONTAINS A PYRIDOXAL 5'-PHOSPHATE COFACTOR

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.1: 13 residues within 4Å: Chain A: G.97, V.98, V.99, P.100, Y.123, C.171, N.175, D.203, I.205, H.206, S.237, K.238 Chain B: Y.64 13 PLIP interactions: 11 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:Y.123, A:I.205, A:I.205, A:K.238 Hydrogen bonds: A:V.98, A:V.99, A:N.175, A:S.237, A:S.248, A:S.248, B:Y.64 pi-Stacking: A:Y.123 Water bridges: B:Y.64 PLP.2: 11 residues within 4Å: Chain A: Y.64 Chain B: G.97, V.98, Y.123, C.171, N.175, D.203, I.205, H.206, S.237, K.238 12 PLIP interactions: 10 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:Y.123, B:I.205, B:I.205, B:K.238 Hydrogen bonds: B:V.98, B:Y.123, B:N.175, B:S.237, B:S.248, A:Y.64, A:Y.64 pi-Stacking: B:Y.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Krupka, H.I. et al., Crystal structure of cystalysin from Treponema denticola: a pyridoxal 5'-phosphate-dependent protein acting as a haemolytic enzyme. EMBO J. (2000)

Release Date

2000-07-26

Peptides

CYSTALYSIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

CYSTALYSIN

Related Entries With Identical Sequence