SMTL ID : 1cw0.1

CRYSTAL STRUCTURE ANALYSIS OF VERY SHORT PATCH REPAIR (VSR) ENDONUCLEASE IN COMPLEX WITH A DUPLEX DNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x DA- DG- DC: DNA (5'-D(*AP*GP*C)-3')(Non-covalent)

DA-DG-DC.1: 12 residues within 4Å: Chain A: G.9, G.10, C.11, T.12 Chain B: T.18, G.47, R.48, K.88, R.95, R.98 Ligands: DT-DA-DG-DG-DT-DA-DC-DG-DT.2, MG.3 Protein-ligand interaction information (PLIP) not available

1 x DT- DA- DG- DG- DT- DA- DC- DG- DT: DNA (5'-D(P*TP*AP*GP*GP*TP*AP*CP*GP*T)-3')(Non-covalent)

DT-DA-DG-DG-DT-DA-DC-DG-DT.2: 35 residues within 4Å: Chain A: A.1, C.2, G.3, T.4, A.5, C.6, C.7, T.8, G.9, G.10 Chain B: V.3, H.4, R.9, K.11, N.12, A.15, I.16, A.17, T.18, T.21, A.22, I.23, D.50, T.62, G.64, F.66, W.67, H.68, K.88, N.92, E.115, R.119 Ligands: DA-DG-DC.1, MG.3, MG.5 Protein-ligand interaction information (PLIP) not available

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 6 residues within 4Å: Chain B: Q.41, R.48, D.50 Ligands: DA-DG-DC.1, DT-DA-DG-DG-DT-DA-DC-DG-DT.2, MG.5 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.50, H2O.5, H2O.5, H2O.8 MG.5: 4 residues within 4Å: Chain B: D.50, T.62 Ligands: DT-DA-DG-DG-DT-DA-DC-DG-DT.2, MG.3 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.50, B:T.62, H2O.2, H2O.5

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 4 residues within 4Å: Chain B: C.65, H.70, C.72, C.116 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.65, B:H.70, B:C.72, B:C.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tsutakawa, S.E. et al., Recognition of a TG mismatch: the crystal structure of very short patch repair endonuclease in complex with a DNA duplex. Cell(Cambridge,Mass.) (1999)

Release Date

1999-12-12

Peptides

PROTEIN (DNA MISMATCH ENDONUCLEASE): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

PROTEIN (DNA MISMATCH ENDONUCLEASE)