SMTL ID : 1cz7.3 (2 other biounits)

THE CRYSTAL STRUCTURE OF A MINUS-END DIRECTED MICROTUBULE MOTOR PROTEIN NCD REVEALS VARIABLE DIMER CONFORMATIONS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-tetramer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: T.147 Ligands: ADP.2 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.147, H2O.1 MG.3: 2 residues within 4Å: Chain B: T.147 Ligands: ADP.4 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.147 MG.5: 2 residues within 4Å: Chain C: T.147 Ligands: ADP.6 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:T.147, H2O.3 MG.7: 2 residues within 4Å: Chain D: T.147 Ligands: ADP.8 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:T.147

4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 11 residues within 4Å: Chain A: R.60, R.62, Q.141, T.142, G.143, S.144, G.145, K.146, T.147, Y.148 Ligands: MG.1 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:Q.141, A:G.143, A:S.144, A:G.145, A:G.145, A:T.147, A:Y.148 Salt bridges: A:K.146 pi-Stacking: A:Y.148, A:Y.148 pi-Cation interactions: A:R.62 ADP.4: 9 residues within 4Å: Chain B: Q.141, T.142, G.143, S.144, G.145, K.146, T.147, Y.148 Ligands: MG.3 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:Q.141, B:G.143, B:G.145, B:T.147, B:Y.148 Salt bridges: B:K.146 pi-Stacking: B:Y.148, B:Y.148 ADP.6: 11 residues within 4Å: Chain C: R.60, R.62, Q.141, T.142, G.143, S.144, G.145, K.146, T.147, Y.148 Ligands: MG.5 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:Q.141, C:G.143, C:S.144, C:G.145, C:G.145, C:T.147, C:T.147, C:Y.148 Salt bridges: C:K.146 pi-Stacking: C:Y.148, C:Y.148 pi-Cation interactions: C:R.62 ADP.8: 9 residues within 4Å: Chain D: Q.141, T.142, G.143, S.144, G.145, K.146, T.147, Y.148 Ligands: MG.7 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:Q.141, D:G.143, D:G.145, D:T.147, D:Y.148 Salt bridges: D:K.146 pi-Stacking: D:Y.148, D:Y.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kozielski, F. et al., The crystal structure of the minus-end-directed microtubule motor protein ncd reveals variable dimer conformations. Structure Fold.Des. (1999)

Release Date

1999-11-05

Peptides

MICROTUBULE MOTOR PROTEIN NCD: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
C

D
D

MICROTUBULE MOTOR PROTEIN NCD

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