SMTL ID : 1d3c.1

MICHAELIS COMPLEX OF BACILLUS CIRCULANS STRAIN 251 CYCLODEXTRIN GLYCOSYLTRANSFERASE WITH GAMMA-CYCLODEXTRIN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 6 residues within 4Å: Chain A: E.411, R.412, W.413, I.414, S.445, G.446 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.412 Water bridges: A:G.446, A:V.448

3 x GLC- GLC- GLC- GLC- GLC- GLC- GLC- GLC: Cyclooctakis-(1-4)-(alpha-D-glucopyranose)

GLC-GLC-GLC-GLC-GLC-GLC-GLC-GLC.2: 21 residues within 4Å: Chain A: R.47, Y.89, N.94, H.98, Y.100, W.101, H.140, F.183, Y.195, L.197, R.227, N.229, A.230, K.232, H.233, Q.257, F.259, H.327, D.328, D.371, R.375 No protein-ligand interaction detected (PLIP) GLC-GLC-GLC-GLC-GLC-GLC-GLC-GLC.3: 5 residues within 4Å: Chain A: W.616, K.651, W.662, E.663, N.667 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.667, A:N.667 Water bridges: A:W.616 GLC-GLC-GLC-GLC-GLC-GLC-GLC-GLC.4: 12 residues within 4Å: Chain A: S.184, T.185, T.598, A.599, L.600, G.601, Q.602, N.603, N.627, Q.628, Y.633, W.636 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.598, A:Y.633 Water bridges: A:N.627, A:N.627

3 x CA: CALCIUM ION(Non-covalent)

CA.5: 6 residues within 4Å: Chain A: D.27, N.29, N.32, N.33, G.51, D.53 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.27, A:N.29, A:G.51, A:D.53, H2O.9 CA.6: 4 residues within 4Å: Chain A: N.139, I.190, D.199, H.233 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:I.190, A:D.199, A:H.233, H2O.6, H2O.8 CA.7: 2 residues within 4Å: Chain A: A.315, D.577 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:A.315, H2O.4, H2O.9, H2O.11, H2O.25

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.8: 3 residues within 4Å: Chain A: R.377, I.378, F.381 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.381

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Uitdehaag, J.C. et al., The cyclization mechanism of cyclodextrin glycosyltransferase (CGTase) as revealed by a gamma-cyclodextrin-CGTase complex at 1.8-A resolution. J.Biol.Chem. (1999)

Release Date

1999-12-22

Peptides

CYCLODEXTRIN GLYCOSYLTRANSFERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CYCLODEXTRIN GLYCOSYLTRANSFERASE

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