SMTL ID : 1d4m.3 (3 other biounits)

THE CRYSTAL STRUCTURE OF COXSACKIEVIRUS A9 TO 2.9 A RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-6-6-6-6-mer

Ligands

12 x W71: 5-(7-(4-(4,5-DIHYDRO-2-OXAZOLYL)PHENOXY)HEPTYL)-3-METHYL ISOXAZOLE(Non-covalent)

W71.1: 17 residues within 4Å: Chain A: I.95, T.97, F.115, M.117, I.144, Y.146, I.170, M.181, I.183, I.186, Y.192, N.214, L.216, I.219 Chain C: A.24 Chain G: L.14 Ligands: W71.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:T.97, A:F.115, A:Y.146, A:I.183, A:I.183, A:I.186, A:Y.192, A:L.216, A:I.219 Hydrogen bonds: A:T.97 pi-Stacking: A:Y.146 W71.2: 17 residues within 4Å: Chain A: N.96, T.97, K.98, S.187, I.188, Y.192, S.193, Y.210, T.212, L.213, N.214, N.215, L.216 Chain G: L.178, D.182, Y.184 Ligands: W71.1 11 PLIP interactions: 10 interactions with chain A, 1 interactions with chain G Hydrophobic interactions: A:N.96, A:I.188, A:I.188, A:Y.192, A:Y.210, A:L.213, A:N.215, G:L.178 Hydrogen bonds: A:I.188, A:N.215 pi-Cation interactions: A:K.98 W71.4: 16 residues within 4Å: Chain E: I.95, T.97, F.115, M.117, I.144, Y.146, I.170, M.181, I.183, I.186, Y.192, N.214, L.216, I.219 Chain G: A.24 Ligands: W71.5 11 PLIP interactions: 11 interactions with chain E Hydrophobic interactions: E:T.97, E:F.115, E:Y.146, E:I.183, E:I.183, E:I.186, E:Y.192, E:L.216, E:I.219 Hydrogen bonds: E:T.97 pi-Stacking: E:Y.146 W71.5: 14 residues within 4Å: Chain E: N.96, T.97, K.98, S.187, I.188, Y.192, S.193, Y.210, T.212, L.213, N.214, N.215, L.216 Ligands: W71.4 10 PLIP interactions: 10 interactions with chain E Hydrophobic interactions: E:N.96, E:I.188, E:I.188, E:Y.192, E:Y.210, E:L.213, E:N.215 Hydrogen bonds: E:I.188, E:N.215 pi-Cation interactions: E:K.98 W71.7: 16 residues within 4Å: Chain I: I.95, T.97, F.115, M.117, I.144, Y.146, I.170, M.181, I.183, I.186, Y.192, N.214, L.216, I.219 Chain K: A.24 Ligands: W71.8 11 PLIP interactions: 11 interactions with chain I Hydrophobic interactions: I:T.97, I:F.115, I:Y.146, I:I.183, I:I.183, I:I.186, I:Y.192, I:L.216, I:I.219 Hydrogen bonds: I:T.97 pi-Stacking: I:Y.146 W71.8: 14 residues within 4Å: Chain I: N.96, T.97, K.98, S.187, I.188, Y.192, S.193, Y.210, T.212, L.213, N.214, N.215, L.216 Ligands: W71.7 10 PLIP interactions: 10 interactions with chain I Hydrophobic interactions: I:N.96, I:I.188, I:I.188, I:Y.192, I:Y.210, I:L.213, I:N.215 Hydrogen bonds: I:I.188, I:N.215 pi-Cation interactions: I:K.98 W71.10: 17 residues within 4Å: Chain K: L.14 Chain M: I.95, T.97, F.115, M.117, I.144, Y.146, I.170, M.181, I.183, I.186, Y.192, N.214, L.216, I.219 Chain O: A.24 Ligands: W71.11 11 PLIP interactions: 11 interactions with chain M Hydrophobic interactions: M:T.97, M:F.115, M:Y.146, M:I.183, M:I.183, M:I.186, M:Y.192, M:L.216, M:I.219 Hydrogen bonds: M:T.97 pi-Stacking: M:Y.146 W71.11: 17 residues within 4Å: Chain K: L.178, D.182, Y.184 Chain M: N.96, T.97, K.98, S.187, I.188, Y.192, S.193, Y.210, T.212, L.213, N.214, N.215, L.216 Ligands: W71.10 11 PLIP interactions: 10 interactions with chain M, 1 interactions with chain K Hydrophobic interactions: M:N.96, M:I.188, M:I.188, M:Y.192, M:Y.210, M:L.213, M:N.215, K:L.178 Hydrogen bonds: M:I.188, M:N.215 pi-Cation interactions: M:K.98 W71.13: 17 residues within 4Å: Chain Q: I.95, T.97, F.115, M.117, I.144, Y.146, I.170, M.181, I.183, I.186, Y.192, N.214, L.216, I.219 Chain S: A.24 Chain W: L.14 Ligands: W71.14 11 PLIP interactions: 11 interactions with chain Q Hydrophobic interactions: Q:T.97, Q:F.115, Q:Y.146, Q:I.183, Q:I.183, Q:I.186, Q:Y.192, Q:L.216, Q:I.219 Hydrogen bonds: Q:T.97 pi-Stacking: Q:Y.146 W71.14: 17 residues within 4Å: Chain Q: N.96, T.97, K.98, S.187, I.188, Y.192, S.193, Y.210, T.212, L.213, N.214, N.215, L.216 Chain W: L.178, D.182, Y.184 Ligands: W71.13 11 PLIP interactions: 10 interactions with chain Q, 1 interactions with chain W Hydrophobic interactions: Q:N.96, Q:I.188, Q:I.188, Q:Y.192, Q:Y.210, Q:L.213, Q:N.215, W:L.178 Hydrogen bonds: Q:I.188, Q:N.215 pi-Cation interactions: Q:K.98 W71.16: 16 residues within 4Å: Chain U: I.95, T.97, F.115, M.117, I.144, Y.146, I.170, M.181, I.183, I.186, Y.192, N.214, L.216, I.219 Chain W: A.24 Ligands: W71.17 11 PLIP interactions: 11 interactions with chain U Hydrophobic interactions: U:T.97, U:F.115, U:Y.146, U:I.183, U:I.183, U:I.186, U:Y.192, U:L.216, U:I.219 Hydrogen bonds: U:T.97 pi-Stacking: U:Y.146 W71.17: 14 residues within 4Å: Chain U: N.96, T.97, K.98, S.187, I.188, Y.192, S.193, Y.210, T.212, L.213, N.214, N.215, L.216 Ligands: W71.16 10 PLIP interactions: 10 interactions with chain U Hydrophobic interactions: U:N.96, U:I.188, U:I.188, U:Y.192, U:Y.210, U:L.213, U:N.215 Hydrogen bonds: U:I.188, U:N.215 pi-Cation interactions: U:K.98

6 x MYR: MYRISTIC ACID(Covalent)

MYR.3: 11 residues within 4Å: Chain A: G.1, D.2 Chain D: G.1, A.2, I.29, Y.31 Chain H: V.4, T.27, I.29, Y.31 Ligands: MYR.6 3 PLIP interactions: 2 interactions with chain H, 1 interactions with chain D Hydrophobic interactions: H:I.29, D:I.29 Hydrogen bonds: H:T.27 MYR.6: 7 residues within 4Å: Chain E: G.1, D.2 Chain H: G.1, A.2, I.29, Y.31 Ligands: MYR.3 1 PLIP interactions: 1 interactions with chain H Hydrophobic interactions: H:I.29 MYR.9: 7 residues within 4Å: Chain I: G.1, D.2 Chain L: G.1, A.2, I.29, Y.31 Ligands: MYR.12 1 PLIP interactions: 1 interactions with chain L Hydrophobic interactions: L:I.29 MYR.12: 11 residues within 4Å: Chain L: V.4, T.27, I.29, Y.31 Chain M: G.1, D.2 Chain P: G.1, A.2, I.29, Y.31 Ligands: MYR.9 3 PLIP interactions: 2 interactions with chain L, 1 interactions with chain P Hydrophobic interactions: L:I.29, P:I.29 Hydrogen bonds: L:T.27 MYR.15: 11 residues within 4Å: Chain Q: G.1, D.2 Chain T: G.1, A.2, I.29, Y.31 Chain X: V.4, T.27, I.29, Y.31 Ligands: MYR.18 2 PLIP interactions: 1 interactions with chain T, 1 interactions with chain X Hydrophobic interactions: T:I.29, X:I.29 MYR.18: 7 residues within 4Å: Chain U: G.1, D.2 Chain X: G.1, A.2, I.29, Y.31 Ligands: MYR.15 1 PLIP interactions: 1 interactions with chain X Hydrophobic interactions: X:I.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hendry, E. et al., The crystal structure of coxsackievirus A9: new insights into the uncoating mechanisms of enteroviruses. Structure Fold.Des. (1999)

Release Date

1999-12-23

Peptides

PROTEIN (COXSACKIEVIRUS A9): AEIMQU
PROTEIN (COXSACKIEVIRUS A9): BFJNRV
PROTEIN (COXSACKIEVIRUS A9): CGKOSW
PROTEIN (COXSACKIEVIRUS A9): DHLPTX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

E
1

I
1

M
1

Q
1

U
1

B
2

F
2

J
2

N
2

R
2

V
2

C
3

G
3

K
3

O
3

S
3

W
3

D
4

H
4

L
4

P
4

T
4

X
4

PROTEIN (COXSACKIEVIRUS A9)

PROTEIN (COXSACKIEVIRUS A9)

PROTEIN (COXSACKIEVIRUS A9)

PROTEIN (COXSACKIEVIRUS A9)

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