SMTL ID : 1dbt.1 (1 other biounit)

CRYSTAL STRUCTURE OF OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE FROM BACILLUS SUBTILIS COMPLEXED WITH UMP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x U5P: URIDINE-5'-MONOPHOSPHATE(Non-covalent)

U5P.1: 16 residues within 4Å: Chain A: D.11, K.33, D.60, K.62, L.122, T.123, V.160, P.182, R.185, Q.194, V.212, G.214, R.215 Chain B: D.65, I.66, T.69 20 PLIP interactions: 17 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:V.160, A:P.182 Hydrogen bonds: A:K.33, A:K.62, A:T.123, A:T.123, A:T.123, A:Q.194, A:G.214, A:R.215, B:D.65, B:T.69, B:T.69 Water bridges: A:D.11, A:I.184, A:R.185, A:R.185, A:S.216 Salt bridges: A:R.185, A:R.215 U5P.2: 16 residues within 4Å: Chain A: D.65, I.66, T.69 Chain B: D.11, K.33, D.60, K.62, L.122, T.123, V.160, P.182, R.185, Q.194, V.212, G.214, R.215 18 PLIP interactions: 3 interactions with chain A, 15 interactions with chain B Hydrogen bonds: A:D.65, A:T.69, B:K.33, B:K.62, B:T.123, B:T.123, B:T.123, B:Q.194, B:G.214, B:R.215 Water bridges: A:D.65, B:G.183, B:R.185, B:S.216 Hydrophobic interactions: B:V.160, B:P.182 Salt bridges: B:R.185, B:R.215

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Appleby, T.C. et al., The crystal structure and mechanism of orotidine 5'-monophosphate decarboxylase. Proc.Natl.Acad.Sci.USA (2000)

Release Date

2000-03-06

Peptides

OROTIDINE 5'-PHOSPHATE DECARBOXYLASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

OROTIDINE 5'-PHOSPHATE DECARBOXYLASE

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