SMTL ID : 1dk1.1

DETAILED VIEW OF A KEY ELEMENT OF THE RIBOSOME ASSEMBLY: CRYSTAL STRUCTURE OF THE S15-RRNA COMPLEX

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

9 x MG: MAGNESIUM ION(Non-functional Binders)

MG.1: 1 residues within 4Å: Chain A: G.13 No protein-ligand interaction detected (PLIP) MG.2: 1 residues within 4Å: Chain A: G.26 No protein-ligand interaction detected (PLIP) MG.3: 2 residues within 4Å: Chain A: C.48, G.49 No protein-ligand interaction detected (PLIP) MG.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.6: 1 residues within 4Å: Chain A: U.39 No protein-ligand interaction detected (PLIP) MG.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.8: 2 residues within 4Å: Chain A: G.21, U.42 No protein-ligand interaction detected (PLIP) MG.9: 2 residues within 4Å: Chain A: G.5, A.52 No protein-ligand interaction detected (PLIP)

2 x NA: SODIUM ION(Non-functional Binders)

NA.10: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) NA.11: 3 residues within 4Å: Chain A: C.4, G.54, C.55 No protein-ligand interaction detected (PLIP)

1 x K: POTASSIUM ION(Non-covalent)

K.12: 2 residues within 4Å: Chain A: G.40 Chain B: H.50 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nikulin, A. et al., Crystal structure of the S15-rRNA complex. Nat.Struct.Biol. (2000)

Release Date

2000-04-02

Peptides

30S RIBOSOMAL PROTEIN S15: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

30S RIBOSOMAL PROTEIN S15