SMTL ID : 1doh.1

STRUCTURE OF TRIHYDROXYNAPHTHALENE REDUCTASE IN COMPLEX WITH NADPH AND 4-NITRO-INDEN-1-ONE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 28 residues within 4Å: Chain A: G.36, R.39, G.40, I.41, Y.60, A.61, N.62, S.63, A.86, N.87, V.88, N.114, S.115, G.116, I.137, M.162, G.163, S.164, Y.178, K.182, P.208, G.209, G.210, I.211, T.213, D.214, M.215 Ligands: NID.2 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:P.208 Hydrogen bonds: A:R.39, A:R.39, A:I.41, A:A.61, A:N.62, A:S.63, A:N.87, A:V.88, A:N.114, A:S.115, A:K.182, A:I.211, A:I.211, A:T.213, A:T.213, A:D.214, A:M.215 Water bridges: A:G.38, A:R.39, A:R.39, A:G.42, A:N.59, A:N.62, A:N.114 Salt bridges: A:R.39, A:R.39 NDP.3: 28 residues within 4Å: Chain B: G.36, R.39, G.40, I.41, Y.60, A.61, N.62, S.63, A.86, N.87, V.88, N.114, S.115, G.116, I.137, M.162, G.163, S.164, Y.178, K.182, P.208, G.209, G.210, I.211, T.213, D.214, M.215 Ligands: NID.4 31 PLIP interactions: 31 interactions with chain B Hydrophobic interactions: B:P.208 Hydrogen bonds: B:G.36, B:R.39, B:I.41, B:A.61, B:N.62, B:S.63, B:N.87, B:V.88, B:N.114, B:S.115, B:G.116, B:Y.178, B:K.182, B:I.211, B:I.211, B:T.213, B:T.213, B:D.214, B:M.215 Water bridges: B:G.38, B:R.39, B:R.39, B:R.39, B:G.40, B:G.42, B:N.62, B:N.87, B:N.114 Salt bridges: B:R.39, B:R.39 NDP.5: 28 residues within 4Å: Chain C: G.36, R.39, G.40, I.41, Y.60, A.61, N.62, S.63, A.86, N.87, V.88, N.114, S.115, G.116, I.137, M.162, G.163, S.164, Y.178, K.182, P.208, G.209, G.210, I.211, T.213, D.214, M.215 Ligands: NID.6 28 PLIP interactions: 28 interactions with chain C Hydrophobic interactions: C:P.208 Hydrogen bonds: C:R.39, C:R.39, C:I.41, C:A.61, C:N.62, C:S.63, C:N.87, C:V.88, C:N.114, C:S.115, C:Y.178, C:K.182, C:I.211, C:I.211, C:T.213, C:T.213, C:D.214, C:M.215 Water bridges: C:G.38, C:R.39, C:R.39, C:G.42, C:N.59, C:N.62, C:N.114 Salt bridges: C:R.39, C:R.39 NDP.7: 28 residues within 4Å: Chain D: G.36, R.39, G.40, I.41, Y.60, A.61, N.62, S.63, A.86, N.87, V.88, N.114, S.115, G.116, I.137, M.162, G.163, S.164, Y.178, K.182, P.208, G.209, G.210, I.211, T.213, D.214, M.215 Ligands: NID.8 29 PLIP interactions: 29 interactions with chain D Hydrophobic interactions: D:P.208 Hydrogen bonds: D:G.36, D:R.39, D:I.41, D:A.61, D:N.62, D:S.63, D:N.87, D:V.88, D:N.114, D:S.115, D:G.116, D:K.182, D:I.211, D:I.211, D:T.213, D:D.214, D:M.215 Water bridges: D:G.38, D:R.39, D:R.39, D:R.39, D:G.40, D:G.42, D:N.62, D:N.87, D:N.114 Salt bridges: D:R.39, D:R.39

4 x NID: 4-NITRO-INDEN-1-ONE(Non-covalent)

NID.2: 11 residues within 4Å: Chain A: S.164, I.165, Y.178, G.210, M.215, Y.216, C.220, Y.223, W.243, M.283 Ligands: NDP.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.165, A:Y.223, A:W.243 Hydrogen bonds: A:S.164, A:Y.178 pi-Stacking: A:Y.223 NID.4: 11 residues within 4Å: Chain B: S.164, I.165, Y.178, G.210, M.215, Y.216, C.220, Y.223, W.243, M.283 Ligands: NDP.3 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:I.165, B:Y.223, B:W.243 Hydrogen bonds: B:S.164, B:Y.223 pi-Stacking: B:Y.223 NID.6: 11 residues within 4Å: Chain C: S.164, I.165, Y.178, G.210, M.215, Y.216, C.220, Y.223, W.243, M.283 Ligands: NDP.5 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:I.165, C:Y.223, C:W.243 Hydrogen bonds: C:S.164, C:Y.223 pi-Stacking: C:Y.223 NID.8: 11 residues within 4Å: Chain D: S.164, I.165, Y.178, G.210, M.215, Y.216, C.220, Y.223, W.243, M.283 Ligands: NDP.7 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:I.165, D:Y.223, D:W.243 Hydrogen bonds: D:S.164, D:Y.178 pi-Stacking: D:Y.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liao, D. et al., Structures of trihydroxynaphthalene reductase-fungicide complexes: implications for structure-based design and catalysis. Structure (2001)

Release Date

2001-06-06

Peptides

TRIHYDROXYNAPHTHALENE REDUCTASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

TRIHYDROXYNAPHTHALENE REDUCTASE

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