SMTL ID : 1duc.1

EIAV DUTPASE DUDP/STRONTIUM COMPLEX

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-trimer

Ligands

3 x SR: STRONTIUM ION(Non-functional Binders)

SR.1: 2 residues within 4Å: Chain C: K.56 Ligands: DUD.2 No protein-ligand interaction detected (PLIP) SR.3: 2 residues within 4Å: Chain A: K.56 Ligands: DUD.4 No protein-ligand interaction detected (PLIP) SR.5: 2 residues within 4Å: Chain B: K.56 Ligands: DUD.6 No protein-ligand interaction detected (PLIP)

3 x DUD: DEOXYURIDINE-5'-DIPHOSPHATE(Non-covalent)

DUD.2: 15 residues within 4Å: Chain A: N.67, G.68, G.69, I.70, I.71, D.72, Y.75, I.79, Q.80, I.82 Chain C: K.56, S.57, S.58, K.98 Ligands: SR.1 24 PLIP interactions: 14 interactions with chain C, 10 interactions with chain A Hydrogen bonds: C:S.57, C:S.58, A:G.69, A:I.70, A:D.72, A:Q.80, A:Q.80 Water bridges: C:K.56, C:K.56, C:S.57, C:S.57, C:S.57, C:K.98, C:K.98, C:K.98, C:K.98, A:Y.75, A:Y.75, A:I.82 Salt bridges: C:K.56, C:K.98, C:K.98 Hydrophobic interactions: A:I.71, A:Y.75 DUD.4: 15 residues within 4Å: Chain A: K.56, S.57, S.58, K.98 Chain B: N.67, G.68, G.69, I.70, I.71, D.72, Y.75, I.79, Q.80, I.82 Ligands: SR.3 22 PLIP interactions: 14 interactions with chain A, 8 interactions with chain B Hydrogen bonds: A:S.57, A:S.58, B:G.69, B:I.70, B:D.72, B:Q.80, B:Q.80 Water bridges: A:K.56, A:K.56, A:S.57, A:S.57, A:S.57, A:K.98, A:K.98, A:K.98, A:K.98, B:I.82 Salt bridges: A:K.56, A:K.98, A:K.98 Hydrophobic interactions: B:I.71, B:Y.75 DUD.6: 15 residues within 4Å: Chain B: K.56, S.57, S.58, K.98 Chain C: N.67, G.68, G.69, I.70, I.71, D.72, Y.75, I.79, Q.80, I.82 Ligands: SR.5 24 PLIP interactions: 14 interactions with chain B, 10 interactions with chain C Hydrogen bonds: B:S.57, B:S.58, C:G.69, C:I.70, C:D.72, C:Q.80, C:Q.80 Water bridges: B:K.56, B:K.56, B:S.57, B:S.57, B:S.57, B:K.98, B:K.98, B:K.98, B:K.98, C:Y.75, C:Y.75, C:I.82 Salt bridges: B:K.56, B:K.98, B:K.98 Hydrophobic interactions: C:I.71, C:Y.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dauter, Z. et al., Crystal structure of dUTPase from equine infectious anaemia virus; active site metal binding in a substrate analogue complex. J.Mol.Biol. (1999)

Release Date

1998-06-03

Peptides

DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE

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