- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- hetero-oligomer
- Ligands
- 4 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)
BPH.8: 21 residues within 4Å:- Chain A: F.181, A.184, L.185, L.189, L.219
- Chain B: S.59, L.60, G.63, A.125, V.126, W.129, T.133, T.146, A.149, F.150, A.153, A.273, V.274, T.277
- Ligands: BCL.4, BCL.6
10 PLIP interactions:3 interactions with chain A, 7 interactions with chain B- Hydrophobic interactions: A:A.184, A:L.185, A:L.189, B:W.129, B:A.149, B:F.150, B:F.150, B:T.277
- Hydrogen bonds: B:W.129
- pi-Stacking: B:F.150
BPH.9: 29 residues within 4Å:- Chain A: F.41, A.42, G.45, A.93, A.96, F.97, W.100, E.104, I.117, A.120, F.121, F.123, A.124, Y.128, F.146, Y.148, G.149, I.150, H.153, V.241
- Chain B: Y.210, A.213, L.214, M.218, W.252, M.256
- Ligands: BCL.5, BCL.7, U10.10
18 PLIP interactions:15 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:A.93, A:A.120, A:F.121, A:F.121, A:F.123, A:A.124, A:Y.128, A:F.146, A:Y.148, A:Y.148, A:V.241, A:V.241, B:Y.210, B:A.213, B:L.214
- Hydrogen bonds: A:W.100, A:E.104
- pi-Stacking: A:F.121
2 x U10: UBIQUINONE-10(Non-covalent)U10.10: 20 residues within 4Å:- Chain A: W.100
- Chain B: M.218, H.219, T.222, A.248, A.249, W.252, M.256, F.258, N.259, A.260, T.261, M.262, I.265, W.268, M.272
- Ligands: BCL.5, BCL.7, BPH.9, LDA.12
13 PLIP interactions:1 interactions with chain A, 12 interactions with chain B- Hydrophobic interactions: A:W.100, B:M.218, B:W.252, B:M.256, B:F.258, B:F.258, B:A.260, B:I.265, B:W.268, B:W.268, B:W.268
- Hydrogen bonds: B:T.222, B:A.260
U10.11: 15 residues within 4Å:- Chain A: T.182, L.189, H.190, L.193, V.194, E.212, D.213, F.216, Y.222, S.223, I.224, G.225, T.226, I.229, L.232
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:T.182, A:L.189, A:L.193, A:I.224, A:I.229, A:L.232
- Hydrogen bonds: A:I.224, A:G.225
2 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)LDA.12: 7 residues within 4Å:- Chain C: Q.32, F.56
- Chain B: F.208, F.258, W.268, M.272
- Ligands: U10.10
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:F.208, B:F.258, B:W.268
- pi-Cation interactions: B:F.258
LDA.13: 7 residues within 4Å:- Chain B: F.67, M.122, W.157, L.160, V.175, H.182
- Ligands: BCL.4
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:F.67, B:F.67
- Water bridges: B:Y.177
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
-
Axelrod, H.L. et al., Determination of the binding sites of the proton transfer inhibitors Cd2+ and Zn2+ in bacterial reaction centers. Proc.Natl.Acad.Sci.USA (2000)
- Release Date
- 2000-03-08
- Peptides
- PHOTOSYNTHETIC REACTION CENTER REACTION CENTER: A
PHOTOSYNTHETIC REACTION CENTER REACTION CENTER: B
PHOTOSYNTHETIC REACTION CENTER REACTION CENTER: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
LB
MC
H
SMTL ID : 1dv3.1 (1 other biounit)
PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES IN THE CHARGE-SEPARATED D+QAQB-STATE WITH THE PROTON TRANSFER INHIBITOR CD2+
PHOTOSYNTHETIC REACTION CENTER REACTION CENTER
PHOTOSYNTHETIC REACTION CENTER REACTION CENTER
PHOTOSYNTHETIC REACTION CENTER REACTION CENTER
Related Entries With Identical Sequence
1aig.1 | 1aig.2 | 1aij.1 | 1aij.2 | 1ds8.1 | 1ds8.2 | 1dv3.2 | 1dv6.1 | 1dv6.2 | 1e14.1 | 1e6d.1 | 1jgw.1 | 1jgx.1 | 1jgy.1 | 1jgz.1 | 1k6l.1 | 1kby.1 | 1l9b.1 | 1l9j.1 | 1l9j.2 | 1m3x.1 | 1mps.1 | 1ogv.1 | 1pcr.1 | 1qov.1 | 1rg5.1 | 1rgn.1 | 1rqk.1 | 1rvj.1 | 1umx.1 more...less...1z9k.1 |
1z9k.2 |
2bnp.1 |
2bns.1 |
2boz.1 |
2gnu.1 |
2hg3.1 |
2hg9.1 |
2hh1.1 |
2hhk.1 |
2hit.1 |
2hj6.1 |
2j8c.1 |
2j8d.1 |
2jiy.1 |
2jj0.1 |
2rcr.1 |
2uws.1 |
2uwt.1 |
2uwu.1 |
2uwv.1 |
2uww.1 |
2ux3.1 |
2ux4.1 |
2ux5.1 |
2uxj.1 |
2uxk.1 |
2uxl.1 |
2uxm.1 |
3i4d.1 |
4h99.1 |
4h9l.1 |
4hbh.1 |
4hbj.1 |
4in6.1 |
4n7k.1 |
4n7l.1 |
4rcr.1 |
4tqq.1