SMTL ID : 1dzr.1

RMLC FROM SALMONELLA TYPHIMURIUM

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.17 Å

Oligo State

homo-dimer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: M.2, P.17, E.29, S.30, Y.31, N.32, F.36, Q.111 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.29, A:N.32, A:N.32, A:F.36, A:Q.111 GOL.2: 3 residues within 4Å: Chain A: M.1, M.2, K.18 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.2, A:K.18 GOL.3: 3 residues within 4Å: Chain A: G.21, D.22, G.25 No protein-ligand interaction detected (PLIP) GOL.4: 2 residues within 4Å: Chain A: W.99, G.101 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.101, A:G.101 Water bridges: A:W.99, A:W.99, A:W.99 GOL.5: 6 residues within 4Å: Chain A: R.60, H.63, S.167, K.169, D.170 Chain B: R.24 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:H.63, A:S.167, B:R.24 Water bridges: A:D.170

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 5 residues within 4Å: Chain A: R.60, H.63, K.73, H.120, Y.133 5 PLIP interactions: 5 interactions with chain A Water bridges: A:H.63 Salt bridges: A:R.60, A:H.63, A:K.73, A:H.120 SO4.7: 2 residues within 4Å: Chain A: N.103, R.110 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.103 Water bridges: A:R.110 Salt bridges: A:R.110 SO4.8: 5 residues within 4Å: Chain B: H.63, K.73, H.120, Y.133, Y.139 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:H.120, B:Y.139 Water bridges: B:K.73 Salt bridges: B:H.63, B:K.73, B:H.120 SO4.9: 2 residues within 4Å: Chain B: N.103, R.110 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.103 Water bridges: B:N.103 Salt bridges: B:R.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Giraud, M.F. et al., Rmlc, the Third Enzyme of Dtdp-L-Rhamnose Pathway, is a New Class of Epimerase. Nat.Struct.Biol. (2000)

Release Date

2000-04-18

Peptides

DTDP-4-DEHYDRORHAMNOSE 3\,5-EPIMERASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DTDP-4-DEHYDRORHAMNOSE 3\,5-EPIMERASE

Related Entries With Identical Sequence