SMTL ID : 1e3j.1

KETOSE REDUCTASE (SORBITOL DEHYDROGENASE) FROM SILVERLEAF WHITEFLY

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.96, R.97, C.99, C.102, C.110 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.96, A:C.99, A:C.102, A:C.110 ZN.2: 4 residues within 4Å: Chain A: C.41, H.66, E.67, E.152 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.41, A:H.66, A:E.67, H2O.46 ZN.5: 5 residues within 4Å: Chain B: C.96, R.97, C.99, C.102, C.110 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.96, B:C.99, B:C.102, B:C.110 ZN.6: 4 residues within 4Å: Chain B: C.41, H.66, E.67, E.152 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.41, B:H.66, B:E.67, H2O.93 ZN.9: 5 residues within 4Å: Chain C: C.96, R.97, C.99, C.102, C.110 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.96, C:C.99, C:C.102, C:C.110 ZN.10: 4 residues within 4Å: Chain C: C.41, H.66, E.67, E.152 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:C.41, C:H.66, C:E.67, H2O.140 ZN.13: 5 residues within 4Å: Chain D: C.96, R.97, C.99, C.102, C.110 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.96, D:C.99, D:C.102, D:C.110 ZN.14: 4 residues within 4Å: Chain D: C.41, H.66, E.67, E.152 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:C.41, D:H.66, D:E.67, H2O.187

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 7 residues within 4Å: Chain A: G.176, A.177, G.178, A.199, R.200, S.201, R.204 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.177, A:R.200, A:S.201 Salt bridges: A:R.200, A:R.204 PO4.7: 7 residues within 4Å: Chain B: G.176, A.177, G.178, A.199, R.200, S.201, R.204 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:A.177, B:R.200, B:S.201 Salt bridges: B:R.200, B:R.204 PO4.11: 7 residues within 4Å: Chain C: G.176, A.177, G.178, A.199, R.200, S.201, R.204 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:A.177, C:R.200, C:S.201 Salt bridges: C:R.200, C:R.204 PO4.15: 7 residues within 4Å: Chain D: G.176, A.177, G.178, A.199, R.200, S.201, R.204 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:A.177, D:R.200, D:S.201 Salt bridges: D:R.200, D:R.204

4 x BO3: BORIC ACID(Non-covalent)

BO3.4: 4 residues within 4Å: Chain A: R.87, S.144, L.145, R.350 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.87, A:L.145, A:R.350, A:R.350 Water bridges: A:Y.37, A:Y.37 BO3.8: 4 residues within 4Å: Chain B: R.87, S.144, L.145, R.350 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.87, B:L.145, B:R.350, B:R.350 Water bridges: B:E.146 BO3.12: 4 residues within 4Å: Chain C: R.87, S.144, L.145, R.350 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:R.87, C:L.145, C:R.350, C:R.350 Water bridges: C:E.146 BO3.16: 4 residues within 4Å: Chain D: R.87, S.144, L.145, R.350 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:R.87, D:L.145, D:R.350, D:R.350 Water bridges: D:Y.37, D:Y.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Banfield, M.J. et al., Crystal Structure of Nadp(H)-Dependent Ketose Reductase from Besimia Argentifolii at 2.3 Angstrom Resolution. J.Mol.Biol. (2001)

Release Date

2001-02-04

Peptides

NADP(H)-DEPENDENT KETOSE REDUCTASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

NADP(H)-DEPENDENT KETOSE REDUCTASE