SMTL ID : 1e42.2 (1 other biounit)

BETA2-ADAPTIN APPENDAGE DOMAIN, FROM CLATHRIN ADAPTOR AP2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x DTD: DITHIANE DIOL(Non-covalent)

DTD.1: 4 residues within 4Å: Chain A: R.155, A.198, R.200, Y.209 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.200

3 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: N.193, Y.195 No protein-ligand interaction detected (PLIP) MG.3: 1 residues within 4Å: Chain A: E.170 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:E.170, H2O.253, H2O.330, H2O.331, H2O.332, H2O.389 MG.4: 1 residues within 4Å: Chain A: K.163 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:K.163, H2O.199, H2O.315, H2O.316, H2O.317, H2O.325

1 x NI: NICKEL (II) ION(Non-covalent)

NI.5: 1 residues within 4Å: Chain A: H.56 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.56, H2O.43, H2O.49

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 4 residues within 4Å: Chain A: A.75, I.76, P.90, L.91 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: P.114, V.115 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 7 residues within 4Å: Chain A: S.82, F.83, L.121, N.216, I.218, E.243, V.244 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.216, A:E.243 Water bridges: A:E.243, A:E.243

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Owen, D.J. et al., The Structure and Function of the Beta2-Adaptin Appendage Domain. Embo J. (2000)

Release Date

2000-08-21

Peptides

AP-2 COMPLEX SUBUNIT BETA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

AP-2 COMPLEX SUBUNIT BETA

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