SMTL ID : 1eah.2 (3 other biounits)

PV2L COMPLEXED WITH ANTIVIRAL AGENT SCH48973

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-5-5-5-5-mer

Ligands

5 x SC4: 1[2-CHLORO-4-METHOXY-PHENYL-OXYMETHYL]-4-[2,6-DICHLORO-PHENYL-OXYMETHYL]-BENZENE(Non-covalent)

SC4.1: 18 residues within 4Å: Chain A: I.110, Y.112, L.122, S.128, F.130, M.132, F.134, F.136, Y.159, I.194, V.196, V.199, Y.205, H.207, F.237, L.240 Chain C: A.24, I.25 14 PLIP interactions: 13 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:I.110, A:I.110, A:Y.112, A:F.134, A:F.136, A:Y.159, A:Y.159, A:I.194, A:V.199, A:F.237, A:F.237, A:L.240, C:A.24 pi-Stacking: A:Y.205 SC4.3: 18 residues within 4Å: Chain E: I.110, Y.112, L.122, S.128, F.130, M.132, F.134, F.136, Y.159, I.194, V.196, V.199, Y.205, H.207, F.237, L.240 Chain G: A.24, I.25 14 PLIP interactions: 13 interactions with chain E, 1 interactions with chain G Hydrophobic interactions: E:I.110, E:I.110, E:Y.112, E:F.134, E:F.136, E:Y.159, E:Y.159, E:I.194, E:V.199, E:F.237, E:F.237, E:L.240, G:A.24 pi-Stacking: E:Y.205 SC4.5: 18 residues within 4Å: Chain I: I.110, Y.112, L.122, S.128, F.130, M.132, F.134, F.136, Y.159, I.194, V.196, V.199, Y.205, H.207, F.237, L.240 Chain K: A.24, I.25 14 PLIP interactions: 13 interactions with chain I, 1 interactions with chain K Hydrophobic interactions: I:I.110, I:I.110, I:Y.112, I:F.134, I:F.136, I:Y.159, I:Y.159, I:I.194, I:V.199, I:F.237, I:F.237, I:L.240, K:A.24 pi-Stacking: I:Y.205 SC4.7: 18 residues within 4Å: Chain M: I.110, Y.112, L.122, S.128, F.130, M.132, F.134, F.136, Y.159, I.194, V.196, V.199, Y.205, H.207, F.237, L.240 Chain O: A.24, I.25 14 PLIP interactions: 13 interactions with chain M, 1 interactions with chain O Hydrophobic interactions: M:I.110, M:I.110, M:Y.112, M:F.134, M:F.136, M:Y.159, M:Y.159, M:I.194, M:V.199, M:F.237, M:F.237, M:L.240, O:A.24 pi-Stacking: M:Y.205 SC4.9: 18 residues within 4Å: Chain Q: I.110, Y.112, L.122, S.128, F.130, M.132, F.134, F.136, Y.159, I.194, V.196, V.199, Y.205, H.207, F.237, L.240 Chain S: A.24, I.25 14 PLIP interactions: 13 interactions with chain Q, 1 interactions with chain S Hydrophobic interactions: Q:I.110, Q:I.110, Q:Y.112, Q:F.134, Q:F.136, Q:Y.159, Q:Y.159, Q:I.194, Q:V.199, Q:F.237, Q:F.237, Q:L.240, S:A.24 pi-Stacking: Q:Y.205

5 x MYR: MYRISTIC ACID(Covalent)

MYR.2: 6 residues within 4Å: Chain D: G.1, A.2, I.29 Chain H: V.4, T.27, I.29 2 PLIP interactions: 2 interactions with chain H Hydrophobic interactions: H:I.29 Hydrogen bonds: H:T.27 MYR.4: 6 residues within 4Å: Chain H: G.1, A.2, I.29 Chain L: V.4, T.27, I.29 1 PLIP interactions: 1 interactions with chain L Hydrophobic interactions: L:I.29 MYR.6: 6 residues within 4Å: Chain L: G.1, A.2, I.29 Chain P: V.4, T.27, I.29 1 PLIP interactions: 1 interactions with chain P Hydrophobic interactions: P:I.29 MYR.8: 6 residues within 4Å: Chain P: G.1, A.2, I.29 Chain T: V.4, T.27, I.29 2 PLIP interactions: 2 interactions with chain T Hydrophobic interactions: T:I.29 Hydrogen bonds: T:T.27 MYR.10: 6 residues within 4Å: Chain D: V.4, T.27, I.29 Chain T: G.1, A.2, I.29 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:I.29 Hydrogen bonds: D:T.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lentz, K.N. et al., Structure of poliovirus type 2 Lansing complexed with antiviral agent SCH48973: comparison of the structural and biological properties of three poliovirus serotypes. Structure (1997)

Release Date

1998-09-16

Peptides

POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4: AEIMQ
POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4: BFJNR
POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4: CGKOS
POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4: DHLPT

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

E
1

I
1

M
1

Q
1

B
2

F
2

J
2

N
2

R
2

C
3

G
3

K
3

O
3

S
3

D
4

H
4

L
4

P
4

T
4

POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4

POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4

POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4

POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4

Related Entries With Identical Sequence