SMTL ID : 1ebb.1

Bacillus stearothermophilus YhfR

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: M.99, D.100, P.101, I.102, A.103 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.100, A:D.100, A:I.102, A:A.103 SO4.2: 3 residues within 4Å: Chain A: A.1, G.142 Ligands: SO4.3 No protein-ligand interaction detected (PLIP) SO4.3: 6 residues within 4Å: Chain A: T.2, T.3, G.142, E.143, T.144 Ligands: SO4.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.3, A:T.3, A:T.144 SO4.4: 3 residues within 4Å: Chain A: Y.5, R.42, V.46 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.42 SO4.5: 6 residues within 4Å: Chain A: D.87, W.88, P.116, Q.117, R.118, G.119 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.87, A:Q.117, A:R.118, A:G.119 Water bridges: A:D.87, A:D.87 Salt bridges: A:R.118

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 9 residues within 4Å: Chain A: R.8, H.9, N.15, Q.21, R.58, E.82, H.150, G.151 Ligands: GOL.8 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.8, A:N.15, A:Q.21, A:R.58, A:H.150 GOL.7: 3 residues within 4Å: Chain A: P.165, L.166, D.167 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.166 GOL.8: 8 residues within 4Å: Chain A: N.15, R.19, M.20, Q.21, G.22, E.82, L.85 Ligands: GOL.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.15, A:Q.21, A:G.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rigden, D.J. et al., Structure and Mechanism of Action of a Cofactor-Dependent Phosphoglycerate Mutase Homolog from Bacillus Stearothermophilus with Broad Specificity Phosphatase Activity. J.Mol.Biol. (2002)

Release Date

2002-02-11

Peptides

PHOSPHATASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PHOSPHATASE