SMTL ID : 1evz.1

CRYSTAL STRUCTURE OF LEISHMANIA MEXICANA GLYCEROL-3-PHOSPHATE DEHYDROGENASE IN COMPLEX WITH NAD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 17 residues within 4Å: Chain A: G.22, S.23, G.24, A.25, F.26, G.27, H.45, M.46, F.63, V.92, P.94, F.97, T.124, K.125, S.155, A.157, E.300 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.26, A:K.125 Hydrogen bonds: A:S.23, A:A.25, A:F.26, A:G.27, A:H.45, A:K.125, A:A.157, A:E.300 Water bridges: A:M.46 pi-Stacking: A:F.26, A:F.97, A:F.97 NAD.3: 17 residues within 4Å: Chain B: G.22, S.23, G.24, A.25, F.26, G.27, H.45, M.46, F.63, V.92, P.94, F.97, T.124, K.125, S.155, A.157, E.300 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:F.26, B:K.125 Hydrogen bonds: B:S.23, B:S.23, B:A.25, B:F.26, B:G.27, B:H.45, B:K.125, B:A.157, B:E.300 Water bridges: B:M.46 pi-Stacking: B:F.26, B:F.97, B:F.97

2 x MYS: PENTADECANE(Non-covalent)

MYS.2: 8 residues within 4Å: Chain A: V.219, A.220, P.320, L.342, C.345, Q.348 Chain B: F.165, W.195 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:V.219, A:A.220, A:P.320, A:L.342, B:F.165 MYS.4: 8 residues within 4Å: Chain A: F.165, W.195 Chain B: V.219, A.220, P.320, L.342, C.345, Q.348 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:V.219, B:A.220, B:P.320, B:L.342, A:F.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suresh, S. et al., A potential target enzyme for trypanocidal drugs revealed by the crystal structure of NAD-dependent glycerol-3-phosphate dehydrogenase from Leishmania mexicana. Structure Fold.Des. (2000)

Release Date

2001-02-22

Peptides

GLYCEROL-3-PHOSPHATE DEHYDROGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

GLYCEROL-3-PHOSPHATE DEHYDROGENASE

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