SMTL ID : 1eyk.1

FRUCTOSE-1,6-BISPHOSPHATASE COMPLEX WITH AMP, ZINC, FRUCTOSE-6-PHOSPHATE AND PHOSPHATE (T-STATE)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.23 Å

Oligo State

homo-tetramer

Ligands

4 x F6P: 6-O-phosphono-beta-D-fructofuranose(Non-covalent)

F6P.1: 16 residues within 4Å: Chain A: D.121, G.122, S.123, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, R.276, E.280 Chain B: R.243 Ligands: PO4.3 17 PLIP interactions: 14 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:D.121, A:G.122, A:S.123, A:N.212, A:Y.215, A:M.248, A:Y.264, A:K.274, A:R.276, A:R.276 Water bridges: A:S.124, A:S.124, A:S.124, B:R.243, B:R.243 Salt bridges: A:K.274, B:R.243 F6P.5: 15 residues within 4Å: Chain A: R.243 Chain B: D.121, G.122, S.123, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, R.276, E.280 Ligands: PO4.7 19 PLIP interactions: 18 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.121, B:G.122, B:S.123, B:N.212, B:Y.215, B:Y.244, B:M.248, B:Y.264, B:Y.264, B:K.274, B:R.276 Water bridges: B:S.124, B:S.124, B:S.124, B:S.124, B:Y.244, B:G.246 Salt bridges: B:K.274, A:R.243 F6P.9: 16 residues within 4Å: Chain C: D.121, G.122, S.123, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, R.276, E.280 Chain D: R.243 Ligands: PO4.11 17 PLIP interactions: 14 interactions with chain C, 3 interactions with chain D Hydrogen bonds: C:D.121, C:G.122, C:S.123, C:N.212, C:Y.215, C:M.248, C:Y.264, C:K.274, C:R.276, C:R.276 Water bridges: C:S.124, C:S.124, C:S.124, D:R.243, D:R.243 Salt bridges: C:K.274, D:R.243 F6P.13: 15 residues within 4Å: Chain C: R.243 Chain D: D.121, G.122, S.123, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, R.276, E.280 Ligands: PO4.15 19 PLIP interactions: 1 interactions with chain C, 18 interactions with chain D Salt bridges: C:R.243, D:K.274 Hydrogen bonds: D:D.121, D:G.122, D:S.123, D:N.212, D:Y.215, D:Y.244, D:M.248, D:Y.264, D:Y.264, D:K.274, D:R.276 Water bridges: D:S.124, D:S.124, D:S.124, D:S.124, D:Y.244, D:G.246

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: D.118, D.121, R.276, E.280 Ligands: PO4.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.118, A:D.121, A:E.280 ZN.6: 5 residues within 4Å: Chain B: D.118, D.121, R.276, E.280 Ligands: PO4.7 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.118, B:D.121, B:E.280 ZN.10: 5 residues within 4Å: Chain C: D.118, D.121, R.276, E.280 Ligands: PO4.11 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.118, C:D.121, C:E.280 ZN.14: 5 residues within 4Å: Chain D: D.118, D.121, R.276, E.280 Ligands: PO4.15 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:D.118, D:D.121, D:E.280

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 10 residues within 4Å: Chain A: E.97, D.118, L.120, D.121, G.122, S.123, R.276, E.280 Ligands: F6P.1, ZN.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.122, A:S.123 Salt bridges: A:R.276 PO4.7: 10 residues within 4Å: Chain B: E.97, D.118, L.120, D.121, G.122, S.123, R.276, E.280 Ligands: F6P.5, ZN.6 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:E.97, B:E.97, B:G.122, B:S.123, B:S.123 Salt bridges: B:R.276 PO4.11: 10 residues within 4Å: Chain C: E.97, D.118, L.120, D.121, G.122, S.123, R.276, E.280 Ligands: F6P.9, ZN.10 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:G.122, C:S.123 Salt bridges: C:R.276 PO4.15: 10 residues within 4Å: Chain D: E.97, D.118, L.120, D.121, G.122, S.123, R.276, E.280 Ligands: F6P.13, ZN.14 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:E.97, D:E.97, D:G.122, D:S.123, D:S.123 Salt bridges: D:R.276

4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.4: 15 residues within 4Å: Chain A: V.17, E.20, G.21, A.24, G.26, T.27, G.28, E.29, M.30, T.31, K.112, Y.113, R.140, V.160, M.177 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:T.27, A:T.27, A:T.27, A:G.28, A:E.29, A:M.30, A:T.31, A:T.31, A:Y.113, A:Y.113, A:R.140 Water bridges: A:T.31, A:T.31 Salt bridges: A:K.112 AMP.8: 14 residues within 4Å: Chain B: V.17, E.20, G.21, A.24, G.26, T.27, G.28, E.29, M.30, T.31, K.112, Y.113, R.140, M.177 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:T.27, B:T.27, B:T.27, B:G.28, B:E.29, B:M.30, B:T.31, B:Y.113, B:Y.113, B:R.140 Water bridges: B:T.31, B:T.31, B:K.112 Salt bridges: B:K.112 AMP.12: 15 residues within 4Å: Chain C: V.17, E.20, G.21, A.24, G.26, T.27, G.28, E.29, M.30, T.31, K.112, Y.113, R.140, V.160, M.177 14 PLIP interactions: 14 interactions with chain C Hydrogen bonds: C:T.27, C:T.27, C:T.27, C:G.28, C:E.29, C:M.30, C:T.31, C:T.31, C:Y.113, C:Y.113, C:R.140 Water bridges: C:T.31, C:T.31 Salt bridges: C:K.112 AMP.16: 14 residues within 4Å: Chain D: V.17, E.20, G.21, A.24, G.26, T.27, G.28, E.29, M.30, T.31, K.112, Y.113, R.140, M.177 14 PLIP interactions: 14 interactions with chain D Hydrogen bonds: D:T.27, D:T.27, D:T.27, D:G.28, D:E.29, D:M.30, D:T.31, D:Y.113, D:Y.113, D:R.140 Water bridges: D:T.31, D:T.31, D:K.112 Salt bridges: D:K.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Choe, J.Y. et al., Crystal structures of fructose 1,6-bisphosphatase: mechanism of catalysis and allosteric inhibition revealed in product complexes. Biochemistry (2000)

Release Date

2000-08-09

Peptides

FRUCTOSE-1,6-BISPHOSPHATASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

FRUCTOSE-1,6-BISPHOSPHATASE

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