SMTL ID : 1f28.1 (1 other biounit)

CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE FROM PNEUMOCYSTIS CARINII BOUND TO DUMP AND BW1843U89

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE(Covalent)(Non-covalent)

UMP.1: 17 residues within 4Å: Chain A: R.26, Y.113, L.170, C.173, H.174, Q.198, R.199, S.200, C.201, D.202, G.206, N.210, H.240, Y.242 Chain B: R.153, R.154 Ligands: F89.2 11 PLIP interactions: 2 interactions with chain B, 9 interactions with chain A Salt bridges: B:R.153, B:R.154, A:R.26, A:R.199 Hydrogen bonds: A:Y.113, A:Q.198, A:S.200, A:D.202, A:N.210, A:N.210, A:H.240 UMP.3: 16 residues within 4Å: Chain A: R.153, R.154 Chain B: R.26, L.170, C.173, H.174, Q.198, R.199, S.200, C.201, D.202, G.206, N.210, H.240, Y.242 Ligands: F89.4 12 PLIP interactions: 10 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:D.202 Hydrogen bonds: B:Q.198, B:S.200, B:D.202, B:N.210, B:N.210, B:H.240 Water bridges: B:Y.113 Salt bridges: B:R.26, B:R.199, A:R.153, A:R.154

2 x F89: S)-2-(5(((1,2-DIHYDRO-3-METHYL-1-OXOBENZO(F)QUINAZOLIN-9-YL)METHYL)AMINO)1-OXO-2-ISOINDOLINYL)GLUTARIC ACID(Non-covalent)

F89.2: 18 residues within 4Å: Chain A: F.58, G.61, V.62, E.65, H.85, I.86, W.87, N.90, L.170, D.202, L.205, G.206, F.209, N.210, Y.242, M.295, S.296 Ligands: UMP.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.86, A:I.86, A:W.87, A:L.170, A:Y.242 Hydrogen bonds: A:E.65, A:H.85, A:G.206 Water bridges: A:D.88, A:N.210 pi-Stacking: A:F.209, A:F.209 F89.4: 19 residues within 4Å: Chain B: F.58, G.61, V.62, E.65, H.85, I.86, W.87, N.90, L.170, D.202, L.205, G.206, F.209, N.210, Y.242, M.295, S.296, I.297 Ligands: UMP.3 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:I.86, B:I.86, B:I.86, B:W.87, B:L.170, B:F.209, B:Y.242 Hydrogen bonds: B:E.65, B:H.85, B:G.206, B:I.297, B:I.297 Water bridges: B:S.296 pi-Stacking: B:W.87, B:F.209, B:F.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Anderson, A.C. et al., Approaches to solving the rigid receptor problem by identifying a minimal set of flexible residues during ligand docking. Chem.Biol. (2001)

Release Date

2001-06-06

Peptides

THYMIDYLATE SYNTHASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

THYMIDYLATE SYNTHASE

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