SMTL ID : 1f7p.1

CRYSTAL STRUCTURES OF FELINE IMMUNODEFICIENCY VIRUS DUTP PYROPHOSPHATASE AND ITS NUCLEOTIDE COMPLEXES IN THREE CRYSTAL FORMS.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-trimer

Ligands

2 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 12 residues within 4Å: Chain A: G.67, G.68, V.69, I.70, D.71, Y.74, I.78, G.79, I.81 Chain C: K.55, S.56, S.57 12 PLIP interactions: 7 interactions with chain A, 5 interactions with chain C Hydrophobic interactions: A:Y.74 Hydrogen bonds: A:V.69, A:D.71, A:D.71, A:G.79, A:G.79, C:S.56, C:S.56, C:S.57 Water bridges: A:I.81, C:Q.100 Salt bridges: C:K.55 UDP.2: 11 residues within 4Å: Chain B: K.55, S.56, S.57 Chain C: I.52, G.68, V.69, I.70, D.71, Y.74, I.78, G.79 10 PLIP interactions: 5 interactions with chain C, 5 interactions with chain B Hydrophobic interactions: C:Y.74 Hydrogen bonds: C:D.71, C:G.79, C:G.79, B:S.56, B:S.56, B:S.57 Water bridges: C:I.81 Salt bridges: B:K.55, B:K.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prasad, G.S. et al., Structures of feline immunodeficiency virus dUTP pyrophosphatase and its nucleotide complexes in three crystal forms. Acta Crystallogr.,Sect.D (2000)

Release Date

2000-09-06

Peptides

POL POLYPROTEIN: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

POL POLYPROTEIN

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