SMTL ID : 1fbl.1

STRUCTURE OF FULL-LENGTH PORCINE SYNOVIAL COLLAGENASE (MMP1) REVEALS A C-TERMINAL DOMAIN CONTAINING A CALCIUM-LINKED, FOUR-BLADED BETA-PROPELLER

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

8 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: D.25, E.100, E.102 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.25, A:E.100, A:E.100, A:E.102 CA.2: 4 residues within 4Å: Chain A: D.186, Q.230, D.279, D.328 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.186, A:Q.230, A:D.279, A:D.328 CA.3: 5 residues within 4Å: Chain A: D.59, G.91, I.92, G.93, D.95 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.59, A:G.91, A:G.93, H2O.289, H2O.292 CA.4: 6 residues within 4Å: Chain A: D.76, G.77, G.79, N.81, D.99, E.102 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.76, A:G.77, A:G.79, A:N.81, A:D.99, A:E.102 CA.8: 3 residues within 4Å: Chain B: D.25, E.100, E.102 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.25, B:E.100, B:E.100, B:E.102 CA.9: 4 residues within 4Å: Chain B: D.186, Q.230, D.279, D.328 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.186, B:Q.230, B:D.279, B:D.328 CA.10: 5 residues within 4Å: Chain B: D.59, G.91, I.92, G.93, D.95 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.59, B:G.91, B:G.93, H2O.584, H2O.587 CA.11: 6 residues within 4Å: Chain B: D.76, G.77, G.79, N.81, D.99, E.102 6 PLIP interactions: 6 interactions with chain B Metal complexes: B:D.76, B:G.77, B:G.79, B:N.81, B:D.99, B:E.102

4 x ZN: ZINC ION(Non-covalent)

ZN.5: 4 residues within 4Å: Chain A: H.69, D.71, H.84, H.97 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.69, A:D.71, A:H.84, A:H.97 ZN.6: 4 residues within 4Å: Chain A: H.119, H.123, H.129 Ligands: HTA.7 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.119, A:H.123, A:H.129 ZN.12: 4 residues within 4Å: Chain B: H.69, D.71, H.84, H.97 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.69, B:D.71, B:H.84, B:H.97 ZN.13: 4 residues within 4Å: Chain B: H.119, H.123, H.129 Ligands: HTA.14 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.119, B:H.123, B:H.129

2 x HTA: N-[3-(N'-HYDROXYCARBOXAMIDO)-2-(2-METHYLPROPYL)-PROPANOYL]-O-TYROSINE-N-METHYLAMIDE(Non-covalent)

HTA.7: 15 residues within 4Å: Chain A: G.80, N.81, L.82, A.83, Y.111, H.119, E.120, H.123, H.129, Y.138, P.139, N.140, Y.141 Ligands: ZN.6, HTA.14 9 PLIP interactions: 7 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:N.81, A:H.119 Hydrogen bonds: A:G.80, A:P.139, A:Y.141 Water bridges: A:N.81, A:A.85, B:G.80, B:G.80 HTA.14: 15 residues within 4Å: Chain B: G.80, N.81, L.82, A.83, Y.111, H.119, E.120, H.123, H.129, Y.138, P.139, N.140, Y.141 Ligands: HTA.7, ZN.13 9 PLIP interactions: 7 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:N.81, B:H.119 Hydrogen bonds: B:G.80, B:P.139, B:Y.141 Water bridges: B:N.81, B:A.85, A:G.80, A:G.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, J. et al., Structure of full-length porcine synovial collagenase reveals a C-terminal domain containing a calcium-linked, four-bladed beta-propeller. Structure (1995)

Release Date

1996-01-29

Peptides

FIBROBLAST (INTERSTITIAL) COLLAGENASE (MMP-1): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

FIBROBLAST (INTERSTITIAL) COLLAGENASE (MMP-1)