SMTL ID : 1fdj.1 (1 other biounit)

FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE FROM RABBIT LIVER

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: Q.202, T.254, R.258 Chain B: K.12 7 PLIP interactions: 1 interactions with chain B, 6 interactions with chain A Salt bridges: B:K.12, A:R.258 Water bridges: A:Q.202, A:Q.202, A:T.254, A:R.258, A:R.258 SO4.3: 3 residues within 4Å: Chain A: K.12 Chain B: Q.202, R.258 8 PLIP interactions: 4 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:Q.202 Water bridges: B:R.258, B:R.258, A:K.12, A:K.12, A:K.12 Salt bridges: B:R.258, A:K.12 SO4.7: 4 residues within 4Å: Chain C: Q.202, T.254, R.258 Chain D: K.12 8 PLIP interactions: 6 interactions with chain C, 2 interactions with chain D Water bridges: C:Q.202, C:Q.202, C:T.254, C:T.254, C:R.258, D:K.12 Salt bridges: C:R.258, D:K.12 SO4.9: 3 residues within 4Å: Chain C: K.12 Chain D: Q.202, R.258 9 PLIP interactions: 4 interactions with chain C, 5 interactions with chain D Water bridges: C:K.12, C:K.12, C:K.12, D:T.254, D:R.258, D:R.258 Salt bridges: C:K.12, D:R.258 Hydrogen bonds: D:Q.202

4 x 2FP: 1,6-FRUCTOSE DIPHOSPHATE (LINEAR FORM)(Non-covalent)

2FP.2: 12 residues within 4Å: Chain A: R.42, K.107, K.146, R.148, E.187, E.189, L.270, S.271, G.272, G.273, G.302, R.303 30 PLIP interactions: 30 interactions with chain A Hydrogen bonds: A:K.146, A:K.146, A:R.148, A:R.148, A:S.271, A:S.271, A:G.272, A:G.273, A:G.302, A:R.303 Water bridges: A:A.31, A:T.38, A:T.38, A:T.38, A:T.38, A:R.42, A:K.107, A:K.107, A:K.107, A:K.107, A:K.107, A:K.107, A:R.148, A:R.148, A:K.229 Salt bridges: A:R.42, A:K.107, A:K.146, A:R.148, A:R.303 2FP.4: 16 residues within 4Å: Chain B: D.33, K.107, K.146, R.148, E.187, E.189, K.229, L.270, S.271, G.272, G.273, S.300, G.302, R.303 Ligands: 13P.5, G3P.6 19 PLIP interactions: 19 interactions with chain B Hydrogen bonds: B:R.148, B:K.229, B:S.271, B:G.272, B:G.273, B:R.303 Water bridges: B:D.33, B:R.42, B:R.42, B:K.107, B:K.146, B:R.148, B:E.189, B:E.189, B:G.272, B:R.303 Salt bridges: B:K.107, B:K.146, B:R.148 2FP.8: 12 residues within 4Å: Chain C: R.42, K.107, K.146, R.148, E.187, E.189, L.270, S.271, G.272, G.273, G.302, R.303 26 PLIP interactions: 26 interactions with chain C Hydrogen bonds: C:K.146, C:K.146, C:R.148, C:R.148, C:S.271, C:G.272, C:G.273, C:G.302, C:R.303 Water bridges: C:R.42, C:K.107, C:K.107, C:K.107, C:K.107, C:K.107, C:K.107, C:K.107, C:K.107, C:R.148, C:R.148, C:K.229 Salt bridges: C:R.42, C:K.107, C:K.146, C:R.148, C:R.303 2FP.10: 16 residues within 4Å: Chain D: D.33, K.107, K.146, R.148, E.187, E.189, K.229, L.270, S.271, G.272, G.273, S.300, G.302, R.303 Ligands: 13P.11, G3P.12 19 PLIP interactions: 19 interactions with chain D Hydrogen bonds: D:R.148, D:K.229, D:S.271, D:G.272, D:G.273, D:R.303 Water bridges: D:D.33, D:R.42, D:R.42, D:K.107, D:K.146, D:R.148, D:E.189, D:E.189, D:G.272, D:R.303 Salt bridges: D:K.107, D:K.146, D:R.148

2 x 13P: 1,3-DIHYDROXYACETONEPHOSPHATE(Non-covalent)

13P.5: 12 residues within 4Å: Chain B: A.31, R.42, K.229, L.270, S.271, G.272, G.273, S.300, Y.301, G.302, R.303 Ligands: 2FP.4 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:R.42, B:S.271, B:G.272, B:S.300, B:G.302, B:R.303 Water bridges: B:E.34, B:K.229, B:K.229, B:K.229, B:R.303 Salt bridges: B:K.229 13P.11: 12 residues within 4Å: Chain D: A.31, R.42, K.229, L.270, S.271, G.272, G.273, S.300, Y.301, G.302, R.303 Ligands: 2FP.10 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:R.42, D:S.271, D:G.272, D:S.300, D:G.302, D:R.303 Water bridges: D:K.229, D:K.229, D:K.229, D:R.303 Salt bridges: D:K.229

2 x G3P: SN-GLYCEROL-3-PHOSPHATE(Non-covalent)

G3P.6: 4 residues within 4Å: Chain B: T.38, K.107, R.148 Ligands: 2FP.4 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:T.38, B:K.107, B:R.148 Water bridges: B:D.33, B:D.33, B:D.33, B:S.35, B:S.35, B:R.42, B:K.107, B:K.107, B:D.109, B:D.109, B:K.146 Salt bridges: B:R.148 G3P.12: 4 residues within 4Å: Chain D: T.38, K.107, R.148 Ligands: 2FP.10 14 PLIP interactions: 14 interactions with chain D Hydrogen bonds: D:K.107, D:R.148 Water bridges: D:D.33, D:D.33, D:D.33, D:S.35, D:S.35, D:R.42, D:K.107, D:K.107, D:D.109, D:D.109, D:K.146 Salt bridges: D:R.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blom, N.S. et al., Reaction intermediates of Rabbit liver D-fructose 1,6-bisphosphate Aldolase. To be Published

Release Date

2001-07-25

Peptides

FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE

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