SMTL ID : 1fif.1

N-ACETYLGALACTOSAMINE-SELECTIVE MUTANT OF MANNOSE-BINDING PROTEIN-A (QPDWG-HDRPY)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-trimer

Ligands

9 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.89, E.93, D.116, E.126, D.127 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.89, A:E.93, A:D.116, A:D.127, H2O.6 CA.2: 5 residues within 4Å: Chain A: Q.113, D.115, E.126, N.138, D.139 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.115, A:E.126, A:D.139, A:D.139, H2O.2 CA.3: 1 residues within 4Å: Chain A: E.12 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.12, H2O.1, H2O.6 CA.5: 6 residues within 4Å: Chain B: D.89, E.93, D.116, E.126, D.127 Ligands: CA.7 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.89, B:E.93, B:E.93, B:D.116, H2O.11 CA.6: 4 residues within 4Å: Chain B: Q.113, D.115, E.126, D.139 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.115, B:E.126, B:D.139, B:D.139, H2O.8 CA.7: 3 residues within 4Å: Chain B: E.93, D.127 Ligands: CA.5 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:E.93, H2O.6, H2O.11, H2O.11, H2O.11 CA.8: 5 residues within 4Å: Chain C: D.89, E.93, D.116, E.126, D.127 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.89, C:D.89, C:E.93, C:D.116, H2O.16 CA.9: 5 residues within 4Å: Chain C: Q.113, D.115, E.126, N.138, D.139 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.115, C:E.126, C:D.139, C:D.139, H2O.13 CA.10: 1 residues within 4Å: Chain C: E.12 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:E.12, H2O.6, H2O.16, H2O.16

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 5 residues within 4Å: Chain A: G.125, E.126, D.127, S.141, C.142 Ligand excluded by PLIP CL.11: 5 residues within 4Å: Chain C: G.125, E.126, D.127, S.141, C.142 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feinberg, H. et al., Mechanism of pH-dependent N-acetylgalactosamine binding by a functional mimic of the hepatocyte asialoglycoprotein receptor. J.Biol.Chem. (2000)

Release Date

2000-08-23

Peptides

MANNOSE-BINDING PROTEIN-A: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

MANNOSE-BINDING PROTEIN-A

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