SMTL ID : 1fmj.1 (1 other biounit)

CRYSTAL STRUCTURE OF MERCURY DERIVATIVE OF RETINOL DEHYDRATASE IN A COMPLEX WITH RETINOL AND PAP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x HG: MERCURY (II) ION(Non-covalent)

HG.1: 4 residues within 4Å: Chain A: D.250, D.254, G.257, C.258 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.254, A:C.258 HG.2: 2 residues within 4Å: Chain A: C.279, E.280 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.279 HG.3: 2 residues within 4Å: Chain A: C.318, D.321 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.318

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 3 residues within 4Å: Chain A: E.118, N.121, D.122 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.118, A:D.122

1 x A3P: ADENOSINE-3'-5'-DIPHOSPHATE(Non-covalent)

A3P.5: 17 residues within 4Å: Chain A: R.73, S.74, G.75, T.76, T.77, M.78, R.185, S.193, Y.248, L.252, L.282, F.284, F.287, I.311, R.312, K.313, G.314 27 PLIP interactions: 27 interactions with chain A Hydrogen bonds: A:R.73, A:R.73, A:S.74, A:G.75, A:T.76, A:T.76, A:T.77, A:T.77, A:S.193, A:L.282, A:R.312, A:K.313, A:G.314 Water bridges: A:R.73, A:M.78, A:M.78, A:S.193, A:F.284, A:F.284, A:R.312, A:R.312, A:K.315 Salt bridges: A:R.73, A:R.185, A:R.312 pi-Stacking: A:F.284, A:F.284

1 x RTL: RETINOL(Non-covalent)

RTL.6: 12 residues within 4Å: Chain A: F.31, Y.105, Y.112, Y.120, L.139, S.142, K.162, H.164, H.197, M.295, I.303, F.310 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.31, A:Y.112, A:Y.120, A:L.139, A:I.303 Hydrogen bonds: A:K.162, A:H.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pakhomova, S. et al., A helical lid converts a sulfotransferase to a dehydratase. Nat.Struct.Biol. (2001)

Release Date

2001-05-02

Peptides

RETINOL DEHYDRATASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RETINOL DEHYDRATASE

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