SMTL ID : 1fq6.1

X-RAY STRUCTURE OF GLYCOL INHIBITOR PD-133,450 BOUND TO SACCHAROPEPSIN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- BMA- GUP: alpha-L-gulopyranose-(1-2)-beta-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-BMA-GUP.1: 11 residues within 4Å: Chain A: N.68, T.70, I.85, D.101, D.127, D.132, K.133, V.134, V.135, Y.139, Q.143 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.127, A:D.127, A:D.132

1 x 0QF: N-[(1S)-2-{[(2S,3R,4S)-1-cyclohexyl-3,4-dihydroxy-6-methylheptan-2-yl]amino}-1-(ethylsulfanyl)-2-oxoethyl]-Nalpha-(morp holin-4-ylsulfonyl)-L-phenylalaninamide(Non-covalent)

0QF.2: 17 residues within 4Å: Chain A: Q.14, I.31, D.33, G.35, Y.76, G.77, T.78, T.112, F.113, F.118, I.121, Y.193, D.218, G.220, T.221, S.222, I.303 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:Q.14, A:I.31, A:Y.76, A:T.112, A:F.113, A:F.118, A:Y.193 Hydrogen bonds: A:D.33, A:G.77, A:T.78, A:T.78, A:T.78, A:G.220, A:S.222, A:S.222, A:S.222 Water bridges: A:L.223, A:Q.247

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: I.262, G.267, N.269 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.269

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cronin, N.B. et al., X-ray structures of five renin inhibitors bound to saccharopepsin: exploration of active-site specificity. J.Mol.Biol. (2000)

Release Date

2000-09-20

Peptides

SACCHAROPEPSIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SACCHAROPEPSIN

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