Toggle navigation
Modelling
myWorkspace
Alignment Mode
User Template Mode
DeepView Project Mode
Modelling API
Template Library
Repository
SWISS-MODEL Repository
Repository API
3D-Beacons API
Annotation Projects
TBvar3D
Tools
Structure Assessment
Structure Comparison
QMEAN
Documentation
SWISS-MODEL
Examples
Video Tutorial
New Features
SWISS-MODEL Repository
QMEAN
Structure Assessment
Structure Comparison
TBvar3D
Protein Structure Course
References
Log in
Create Account
SMTL ID : 1fq8.2
(1 other biounit)
X-RAY STRUCTURE OF DIFLUOROSTATINE INHIBITOR CP81,198 BOUND TO SACCHAROPEPSIN
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.80 Å
Oligo State
homo-dimer
Ligands
2 x
NAG
-
NAG
-
MAN
-
MAN
-
BMA
:
beta-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-MAN-MAN-BMA.1:
9 residues within 4Å:
Chain A:
N.68
,
T.70
,
D.101
,
D.132
,
K.133
,
V.134
,
V.135
,
Y.139
,
Q.143
1
PLIP interactions
:
1 interactions with chain A
Hydrogen bonds:
A:Q.143
,
A:D.132
NAG-NAG-MAN-MAN-BMA.4:
9 residues within 4Å:
Chain B:
N.68
,
T.70
,
D.101
,
D.132
,
K.133
,
V.134
,
V.135
,
Y.139
,
Q.143
1
PLIP interactions
:
1 interactions with chain B
Hydrogen bonds:
B:Q.143
,
B:D.132
2 x
2Y4
:
N-[(2S)-1-[[(2S)-1-[[(2S,3R)-1-cyclohexyl-4,4-difluoro-3-hydroxy-5-(methylamino)-5-oxo-pentan-2-yl]amino]-1-oxo-hexan-2 -yl]amino]-1-oxo-3-phenyl-propan-2-yl]morpholine-4-carboxamide
(Non-covalent)
2Y4.2:
19 residues within 4Å:
Chain A:
A.13
,
Q.14
,
I.31
,
D.33
,
G.35
,
Y.76
,
G.77
,
T.78
,
T.112
,
F.113
,
F.118
,
D.218
,
G.220
,
T.221
,
S.222
,
L.223
,
Q.247
,
F.294
,
I.303
20
PLIP interactions
:
20 interactions with chain A
Hydrophobic interactions:
A:Q.14
,
A:I.31
,
A:I.31
,
A:Y.76
,
A:T.78
,
A:F.113
,
A:F.118
,
A:T.221
,
A:F.294
,
A:I.303
Hydrogen bonds:
A:G.77
,
A:T.78
,
A:T.78
,
A:T.78
,
A:G.220
,
A:T.221
,
A:S.222
,
A:S.222
,
A:S.222
Water bridges:
A:L.223
2Y4.5:
19 residues within 4Å:
Chain B:
A.13
,
Q.14
,
I.31
,
D.33
,
G.35
,
Y.76
,
G.77
,
T.78
,
T.112
,
F.113
,
F.118
,
D.218
,
G.220
,
T.221
,
S.222
,
L.223
,
Q.247
,
F.294
,
I.303
21
PLIP interactions
:
21 interactions with chain B
Hydrophobic interactions:
B:Q.14
,
B:I.31
,
B:I.31
,
B:Y.76
,
B:T.78
,
B:F.113
,
B:F.118
,
B:T.221
,
B:F.294
,
B:I.303
Hydrogen bonds:
B:G.77
,
B:T.78
,
B:T.78
,
B:G.220
,
B:T.221
,
B:T.221
,
B:S.222
,
B:S.222
,
B:S.222
Water bridges:
B:Y.193
,
B:L.223
2 x
NAG
:
2-acetamido-2-deoxy-beta-D-glucopyranose
(Post Translational Modification)
NAG.3:
2 residues within 4Å:
Chain A:
I.262
,
N.269
1
PLIP interactions
:
1 interactions with chain A
Hydrogen bonds:
A:N.269
NAG.6:
2 residues within 4Å:
Chain B:
I.262
,
N.269
1
PLIP interactions
:
1 interactions with chain B
Hydrogen bonds:
B:N.269
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Cronin, N.B. et al., X-ray structures of five renin inhibitors bound to saccharopepsin: exploration of active-site specificity. J.Mol.Biol. (2000)
Release Date
2000-09-20
Peptides
SACCHAROPEPSIN:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
SACCHAROPEPSIN
Toggle Identical (AB)
Related Entries With Identical Sequence
1fq4.1
|
1fq4.2
|
1fq5.1
|
1fq6.1
|
1fq7.1
|
1fq7.2
|
1fq8.1
|
2jxr.1
|
2jxr.2
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme