SMTL ID : 1fze.2 (2 other biounits)

CRYSTAL STRUCTURE OF FRAGMENT DOUBLE-D FROM HUMAN FIBRIN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Non-functional Binders)

NAG.1: 2 residues within 4Å: Chain B: N.231 Ligands: NAG.2 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.231 NAG.2: 1 residues within 4Å: Ligands: NAG.1 No protein-ligand interaction detected (PLIP)

3 x CA: CALCIUM ION(Non-covalent)

CA.3: 3 residues within 4Å: Chain B: D.248, D.250, W.252 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.248, B:D.248, B:D.250, B:W.252 CA.4: 5 residues within 4Å: Chain B: D.128, G.130, Y.245, D.265 Chain C: E.45 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain C Metal complexes: B:D.128, B:G.130, B:D.265, C:E.45 CA.5: 5 residues within 4Å: Chain C: D.231, D.233, F.235, E.236, G.237 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:D.231, C:D.231, C:D.233, C:F.235, C:G.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Everse, S.J. et al., Conformational changes in fragments D and double-D from human fibrin(ogen) upon binding the peptide ligand Gly-His-Arg-Pro-amide. Biochemistry (1999)

Release Date

1999-06-08

Peptides

FIBRINOGEN: A
FIBRINOGEN: B
FIBRINOGEN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

FIBRINOGEN

FIBRINOGEN

FIBRINOGEN

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