- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.77 Å
- Oligo State
- homo-tetramer
- Ligands
- 11 x SO4: SULFATE ION(Non-functional Binders)
- 8 x DAU: 2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE(Non-covalent)
DAU.6: 23 residues within 4Å:- Chain A: L.8, A.9, G.10, G.11, Q.26, Q.82, P.85, D.86, G.87, L.88, L.108, G.109, D.110, N.111, Y.145, G.146, E.161, K.162, V.172, Y.176, E.196, T.200, W.223
24 PLIP interactions:24 interactions with chain A- Hydrophobic interactions: A:L.88
- Hydrogen bonds: A:G.10, A:Q.82, A:Q.82, A:G.87, A:G.109, A:D.110, A:D.110, A:N.111, A:N.111, A:G.146, A:E.161
- Water bridges: A:G.11, A:G.11, A:R.15, A:K.162, A:K.162, A:K.162, A:K.162, A:E.196, A:E.198
- Salt bridges: A:K.25, A:K.162, A:K.162
DAU.7: 19 residues within 4Å:- Chain A: L.45, Y.114, G.115, H.116, D.117, F.118, H.119, E.120, V.250, A.251, E.255, I.256, R.259, Y.293
- Chain C: I.216, G.218, R.219, G.220
- Ligands: SO4.5
22 PLIP interactions:6 interactions with chain C, 16 interactions with chain A- Hydrogen bonds: C:R.219, C:G.220, A:G.115, A:G.115, A:D.117, A:H.119, A:E.120, A:A.251
- Water bridges: C:I.216, C:R.219, C:R.219, A:S.41, A:D.117, A:E.120, A:E.120, A:E.120, A:K.249, A:Y.293
- pi-Cation interactions: C:R.219
- Hydrophobic interactions: A:L.45
- Salt bridges: A:H.116, A:H.116
DAU.12: 25 residues within 4Å:- Chain B: L.8, A.9, G.10, G.11, R.15, Q.26, Q.82, P.85, D.86, G.87, L.88, L.108, G.109, D.110, N.111, Y.145, G.146, E.161, K.162, V.172, G.174, Y.176, E.196, T.200, W.223
26 PLIP interactions:26 interactions with chain B- Hydrophobic interactions: B:L.88
- Hydrogen bonds: B:G.10, B:Q.82, B:Q.82, B:G.87, B:G.109, B:D.110, B:D.110, B:N.111, B:N.111, B:G.146, B:E.161, B:T.200
- Water bridges: B:G.11, B:G.11, B:R.15, B:D.110, B:E.161, B:K.162, B:K.162, B:Y.176, B:Y.176
- Salt bridges: B:R.15, B:K.25, B:K.162, B:K.162
DAU.13: 18 residues within 4Å:- Chain B: L.45, Y.114, G.115, H.116, D.117, F.118, H.119, E.120, V.250, A.251, E.255, I.256, R.259, Y.293
- Chain D: I.216, G.218, R.219, G.220
21 PLIP interactions:13 interactions with chain B, 8 interactions with chain D- Hydrophobic interactions: B:L.45
- Hydrogen bonds: B:G.115, B:D.117, B:D.117, B:F.118, B:H.119, B:E.120, B:A.251, D:R.219, D:R.219, D:G.220
- Water bridges: B:D.117, B:K.249, D:I.216, D:R.219, D:R.219, D:R.219
- Salt bridges: B:H.116, B:H.116, B:H.119
- pi-Cation interactions: D:R.219
DAU.16: 23 residues within 4Å:- Chain C: L.8, A.9, G.10, G.11, K.25, Q.26, Q.82, P.85, D.86, G.87, L.88, L.108, G.109, D.110, N.111, Y.145, G.146, E.161, K.162, V.172, E.196, T.200, W.223
22 PLIP interactions:22 interactions with chain C- Hydrophobic interactions: C:L.88
- Hydrogen bonds: C:G.10, C:Q.82, C:Q.82, C:G.87, C:G.109, C:D.110, C:D.110, C:N.111, C:N.111, C:G.146, C:E.161, C:V.172, C:R.194, C:T.200
- Water bridges: C:G.11, C:G.11, C:K.162, C:K.162
- Salt bridges: C:K.25, C:K.162, C:K.162
DAU.17: 18 residues within 4Å:- Chain A: I.216, G.218, R.219, G.220
- Chain C: L.45, Y.114, G.115, H.116, D.117, F.118, H.119, E.120, V.250, A.251, E.255, I.256, R.259, Y.293
21 PLIP interactions:14 interactions with chain C, 7 interactions with chain A- Hydrophobic interactions: C:L.45
- Hydrogen bonds: C:Y.114, C:G.115, C:G.115, C:D.117, C:F.118, C:H.119, C:E.120, C:A.251, A:R.219, A:G.220
- Water bridges: C:K.249, C:Y.293, A:I.216, A:I.216, A:R.219, A:R.219
- Salt bridges: C:H.116, C:H.116, C:H.119
- pi-Cation interactions: A:R.219
DAU.20: 25 residues within 4Å:- Chain D: L.8, A.9, G.10, G.11, K.25, Q.26, Q.82, P.85, D.86, G.87, L.88, L.108, G.109, D.110, N.111, Y.145, G.146, E.161, K.162, V.172, G.174, Y.176, E.196, T.200, W.223
24 PLIP interactions:24 interactions with chain D- Hydrophobic interactions: D:L.88
- Hydrogen bonds: D:G.10, D:K.25, D:Q.26, D:Q.82, D:Q.82, D:G.87, D:G.109, D:D.110, D:D.110, D:N.111, D:N.111, D:G.146, D:E.161, D:V.172
- Water bridges: D:G.11, D:G.11, D:Y.176, D:Y.176, D:R.194, D:R.194
- Salt bridges: D:K.25, D:K.162, D:K.162
DAU.21: 19 residues within 4Å:- Chain B: I.216, G.218, R.219, G.220
- Chain D: L.45, Y.114, G.115, H.116, D.117, F.118, H.119, E.120, V.250, A.251, E.255, I.256, R.259, Y.293
- Ligands: SO4.19
21 PLIP interactions:15 interactions with chain D, 6 interactions with chain B- Hydrophobic interactions: D:L.45
- Hydrogen bonds: D:Y.114, D:G.115, D:G.115, D:D.117, D:D.117, D:F.118, D:H.119, D:E.120, D:A.251, B:R.219, B:G.220
- Water bridges: D:C.252, D:Y.293, B:I.216, B:I.216, B:R.219
- Salt bridges: D:H.116, D:H.116, D:H.119
- pi-Cation interactions: B:R.219
- 2 x CIT: CITRIC ACID(Non-functional Binders)
CIT.8: 8 residues within 4Å:- Chain A: Y.31, D.32, N.244, K.249, G.279, Y.280
- Chain B: R.15, H.229
12 PLIP interactions:10 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:N.244, A:G.279, B:H.229
- Water bridges: A:N.244, A:K.249, A:K.249, A:K.249, A:Y.280, A:Y.280
- Salt bridges: A:K.249, A:K.249, B:H.229
CIT.9: 6 residues within 4Å:- Chain A: H.229
- Chain B: Y.31, D.32, N.244, K.249, G.279
11 PLIP interactions:8 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:Y.31, B:N.244, B:G.279
- Water bridges: B:N.244, B:K.249, B:K.249, A:T.228, A:H.229
- Salt bridges: B:K.249, B:K.249, A:H.229
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Blankenfeldt, W. et al., The structural basis of the catalytic mechanism and regulation of glucose-1-phosphate thymidylyltransferase (RmlA). EMBO J. (2000)
- Release Date
- 2000-12-27
- Peptides
- GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.77 Å
- Oligo State
- homo-tetramer
- Ligands
- 11 x SO4: SULFATE ION(Non-functional Binders)
- 8 x DAU: 2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE(Non-covalent)
- 2 x CIT: CITRIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Blankenfeldt, W. et al., The structural basis of the catalytic mechanism and regulation of glucose-1-phosphate thymidylyltransferase (RmlA). EMBO J. (2000)
- Release Date
- 2000-12-27
- Peptides
- GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D