SMTL ID : 1g82.3 (3 other biounits)

STRUCTURE OF FIBROBLAST GROWTH FACTOR 9

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-tetramer

Ligands

3 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-FUC.1: 5 residues within 4Å: Chain A: F.29, P.30, N.31, Q.35, F.44 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.30, A:F.44 NAG-NAG-FUC.2: 5 residues within 4Å: Chain B: F.29, N.31, T.33, Q.35, F.44 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.44, B:F.29 Water bridges: B:R.43 Hydrogen bonds: B:Q.35 NAG-NAG-FUC.9: 4 residues within 4Å: Chain D: F.29, P.30, N.31, F.44 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:P.30, D:F.44

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: G.111, R.112, R.113, Y.115, R.132 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.111, A:R.112, A:R.113 Salt bridges: A:R.132 SO4.4: 3 residues within 4Å: Chain A: R.89, K.106, R.113 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.89, A:K.106, A:R.113 SO4.5: 2 residues within 4Å: Chain A: R.125, R.129 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.125, A:R.129 SO4.6: 5 residues within 4Å: Chain B: G.111, R.112, R.113, Y.115, R.132 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.113, B:Y.115 Water bridges: B:R.132, B:R.132 Salt bridges: B:R.132 SO4.7: 3 residues within 4Å: Chain B: R.89, K.106, R.113 6 PLIP interactions: 6 interactions with chain B Water bridges: B:R.89, B:R.89, B:R.89 Salt bridges: B:R.89, B:K.106, B:R.113 SO4.8: 2 residues within 4Å: Chain B: R.125, R.129 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.125, B:R.129 SO4.11: 5 residues within 4Å: Chain C: G.111, R.112, R.113, Y.115, R.132 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:G.111, C:R.113, C:Y.115 Salt bridges: C:R.132 SO4.12: 4 residues within 4Å: Chain C: R.89, L.104, K.106, R.113 3 PLIP interactions: 3 interactions with chain C Salt bridges: C:R.89, C:K.106, C:R.113 SO4.13: 4 residues within 4Å: Chain D: R.112, R.113, Y.115, R.132 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:R.113, D:Y.115, D:Y.115 Water bridges: D:R.112 Salt bridges: D:R.112, D:R.132 SO4.14: 4 residues within 4Å: Chain D: R.89, N.103, K.106, R.113 3 PLIP interactions: 3 interactions with chain D Salt bridges: D:R.89, D:K.106, D:R.113 SO4.15: 2 residues within 4Å: Chain D: R.112, K.131 2 PLIP interactions: 2 interactions with chain D Salt bridges: D:R.112, D:K.131 SO4.16: 2 residues within 4Å: Chain D: R.125, R.129 2 PLIP interactions: 2 interactions with chain D Salt bridges: D:R.125, D:R.129

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.10: 2 residues within 4Å: Chain C: N.31, T.33 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.31, C:T.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hecht, H.J. et al., Structure of fibroblast growth factor 9 shows a symmetric dimer with unique receptor- and heparin-binding interfaces. Acta Crystallogr.,Sect.D (2001)

Release Date

2001-03-07

Peptides

FIBROBLAST GROWTH FACTOR 9: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
B

D
C

FIBROBLAST GROWTH FACTOR 9

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