SMTL ID : 1gar.1

TOWARDS STRUCTURE-BASED DRUG DESIGN: CRYSTAL STRUCTURE OF A MULTISUBSTRATE ADDUCT COMPLEX OF GLYCINAMIDE RIBONUCLEOTIDE TRANSFORMYLASE AT 1.96 ANGSTROMS RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

homo-dimer

Ligands

2 x U89: N-[4-[[3-(2,4-DIAMINO-1,6-DIHYDRO-6-OXO-4-PYRIMIDINYL)-PROPYL]-[2-((2-OXO-2-((4-PHOSPHORIBOXY)-BUTYL)-AMINO)-ETHYL)-THIO-ACETYL]-AMINO]BENZOYL]-1-GLUTAMIC ACID(Non-covalent)

U89.1: 22 residues within 4Å: Chain A: N.10, G.11, S.12, N.13, R.64, G.87, F.88, M.89, R.90, I.91, L.92, N.106, I.107, H.108, P.109, H.137, V.139, T.140, L.143, D.144, Q.170, E.173 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:I.91 Hydrogen bonds: A:G.11, A:S.12, A:N.13, A:N.13, A:M.89, A:R.90, A:I.91, A:L.92, A:L.92, A:I.107, A:H.108, A:T.140, A:D.144 Water bridges: A:N.10, A:S.12, A:S.12, A:L.14, A:M.89, A:G.145 Salt bridges: A:R.64, A:R.90 U89.2: 20 residues within 4Å: Chain B: N.10, G.11, S.12, N.13, R.64, L.85, G.87, M.89, R.90, I.91, L.92, N.106, I.107, H.108, P.109, H.137, V.139, L.143, D.144, E.173 23 PLIP interactions: 23 interactions with chain B Hydrophobic interactions: B:L.85, B:I.91, B:L.143 Hydrogen bonds: B:N.10, B:G.11, B:S.12, B:N.13, B:N.13, B:M.89, B:R.90, B:I.91, B:L.92, B:L.92, B:N.106, B:I.107, B:D.144 Water bridges: B:N.10, B:G.11, B:L.14, B:R.90, B:Q.170 Salt bridges: B:R.64, B:R.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Klein, C. et al., Towards structure-based drug design: crystal structure of a multisubstrate adduct complex of glycinamide ribonucleotide transformylase at 1.96 A resolution. J.Mol.Biol. (1995)

Release Date

1995-07-10

Peptides

GLYCINAMIDE RIBONUCLEOTIDE TRANSFORMYLASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GLYCINAMIDE RIBONUCLEOTIDE TRANSFORMYLASE

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