SMTL ID : 1gd0.1

HUMAN MACROPHAGE MIGRATION INHIBITORY FACTOR (MIF)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-trimer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: E.116, H.117, H.118 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.118 Salt bridges: A:H.117 SO4.2: 3 residues within 4Å: Chain A: H.118 Chain C: A.70, R.73 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Salt bridges: A:H.118, C:R.73 SO4.3: 4 residues within 4Å: Chain A: G.68, G.69, A.70, Q.71 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.69, A:A.70, A:Q.71, A:Q.71 SO4.5: 3 residues within 4Å: Chain B: A.70, R.73 Chain C: H.118 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.73 SO4.6: 4 residues within 4Å: Chain B: G.68, G.69, A.70, Q.71 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:A.70, B:Q.71, B:Q.71 Water bridges: B:G.69, B:G.69 SO4.8: 3 residues within 4Å: Chain C: E.116, H.117, H.118 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:E.116, C:H.118 Water bridges: C:H.117 Salt bridges: C:H.117 SO4.9: 4 residues within 4Å: Chain C: G.68, G.69, A.70, Q.71 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:G.68, C:G.69, C:A.70, C:Q.71, C:Q.71

3 x CIT: CITRIC ACID(Non-functional Binders)

CIT.4: 13 residues within 4Å: Chain A: I.4, N.6, L.58, C.59, S.60, N.97, Y.99 Chain B: M.2, I.4, H.40, H.62 Ligands: CIT.7, CIT.10 10 PLIP interactions: 5 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:I.4, A:L.58 Water bridges: B:S.60, B:S.60 Salt bridges: B:H.40, B:H.62 Hydrogen bonds: A:N.6, A:C.59, A:S.60, A:N.97 CIT.7: 13 residues within 4Å: Chain B: I.4, N.6, L.58, C.59, S.60, N.97, Y.99 Chain C: M.2, I.4, H.40, H.62 Ligands: CIT.4, CIT.10 10 PLIP interactions: 5 interactions with chain B, 5 interactions with chain C Hydrophobic interactions: B:L.58, C:I.4 Hydrogen bonds: B:N.6, B:S.60, B:N.97, B:Y.99 Water bridges: C:S.60, C:S.60 Salt bridges: C:H.40, C:H.62 CIT.10: 13 residues within 4Å: Chain A: M.2, I.4, H.40, H.62 Chain C: I.4, N.6, L.58, C.59, S.60, N.97, Y.99 Ligands: CIT.4, CIT.7 9 PLIP interactions: 4 interactions with chain C, 5 interactions with chain A Hydrophobic interactions: C:L.58, A:I.4 Hydrogen bonds: C:N.6, C:S.60, C:N.97 Water bridges: A:S.60, A:S.60 Salt bridges: A:H.40, A:H.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Orita, M. et al., Coumarin and chromen-4-one analogues as tautomerase inhibitors of macrophage migration inhibitory factor: discovery and X-ray crystallography. J.Med.Chem. (2001)

Release Date

2001-02-21

Peptides

MACROPHAGE MIGRATION INHIBITORY FACTOR: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

MACROPHAGE MIGRATION INHIBITORY FACTOR

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