SMTL ID : 1gee.3 (2 other biounits)

Crystal structure of glucose dehydrogenase mutant Q252L complexed with NAD+

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 27 residues within 4Å: Chain A: G.14, S.16, T.17, G.18, L.19, R.39, G.64, D.65, V.66, T.67, N.92, A.93, G.94, T.115, M.143, S.144, S.145, Y.158, K.162, P.188, G.189, A.190, I.191, T.193, P.194, I.195, N.196 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:P.188 Hydrogen bonds: A:T.17, A:T.17, A:T.17, A:L.19, A:D.65, A:V.66, A:N.92, A:N.92, A:G.94, A:K.162, A:I.191, A:I.191, A:T.193, A:N.196 Water bridges: A:G.14, A:S.16, A:G.20, A:R.39, A:G.94, A:L.95, A:T.115, A:T.115 NAD.2: 27 residues within 4Å: Chain B: G.14, S.16, T.17, G.18, L.19, R.39, G.64, D.65, V.66, T.67, N.92, A.93, G.94, T.115, M.143, S.144, S.145, Y.158, K.162, P.188, G.189, A.190, I.191, T.193, P.194, I.195, N.196 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:P.188 Hydrogen bonds: B:T.17, B:T.17, B:T.17, B:L.19, B:D.65, B:V.66, B:N.92, B:N.92, B:G.94, B:K.162, B:I.191, B:I.191, B:T.193, B:N.196 Water bridges: B:G.14, B:S.16, B:S.16, B:G.20, B:E.44, B:G.94, B:E.96 NAD.3: 27 residues within 4Å: Chain C: G.14, S.16, T.17, G.18, L.19, R.39, G.64, D.65, V.66, T.67, N.92, A.93, G.94, T.115, M.143, S.144, S.145, Y.158, K.162, P.188, G.189, A.190, I.191, T.193, P.194, I.195, N.196 22 PLIP interactions: 22 interactions with chain C Hydrophobic interactions: C:P.188 Hydrogen bonds: C:T.17, C:T.17, C:L.19, C:D.65, C:V.66, C:N.92, C:N.92, C:G.94, C:Y.158, C:K.162, C:I.191, C:I.191, C:N.196 Water bridges: C:G.14, C:S.16, C:G.20, C:R.39, C:R.39, C:R.39, C:G.94, C:L.95 NAD.4: 27 residues within 4Å: Chain D: G.14, S.16, T.17, G.18, L.19, R.39, G.64, D.65, V.66, T.67, N.92, A.93, G.94, T.115, M.143, S.144, S.145, Y.158, K.162, P.188, G.189, A.190, I.191, T.193, P.194, I.195, N.196 23 PLIP interactions: 23 interactions with chain D Hydrophobic interactions: D:P.188 Hydrogen bonds: D:T.17, D:T.17, D:L.19, D:D.65, D:V.66, D:N.92, D:N.92, D:G.94, D:Y.158, D:K.162, D:I.191, D:I.191, D:N.196 Water bridges: D:G.14, D:S.16, D:S.16, D:G.20, D:E.44, D:E.44, D:G.94, D:L.95, D:T.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamamoto, K. et al., Structural analysis of stability-increasing mutants of glucose dehydrogenase. To be Published

Release Date

2003-08-12

Peptides

GLUCOSE 1-DEHYDROGENASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
E

D
F

GLUCOSE 1-DEHYDROGENASE

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