SMTL ID : 1ggm.1

GLYCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH GLYCYL-ADENYLATE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

homo-dimer

Ligands

2 x GAP: GLYCYL-ADENOSINE-5'-PHOSPHATE(Non-covalent)

GAP.1: 22 residues within 4Å: Chain A: E.125, T.126, A.127, R.157, E.159, F.167, R.168, V.169, R.170, F.172, Q.174, E.176, Y.224, E.241, L.242, E.243, G.244, R.248, E.296, S.298, G.300, R.303 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:E.125, A:E.159, A:V.169, A:Q.174, A:E.241, A:E.241, A:R.248, A:S.298, A:G.300, A:R.303 Salt bridges: A:R.157, A:R.157 pi-Stacking: A:F.172, A:F.172 GAP.2: 21 residues within 4Å: Chain B: E.125, A.127, R.157, E.159, F.167, R.168, V.169, F.172, Q.174, E.176, Y.224, E.241, L.242, E.243, G.244, R.248, E.296, S.298, A.299, G.300, R.303 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:R.157, B:V.169, B:V.169, B:Q.174, B:E.241, B:R.248, B:S.298, B:S.298, B:R.303 Salt bridges: B:R.157, B:R.157 pi-Stacking: B:F.172, B:F.172 pi-Cation interactions: B:R.303, B:R.303

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arnez, J.G. et al., Glycyl-tRNA synthetase uses a negatively charged pit for specific recognition and activation of glycine. J.Mol.Biol. (1999)

Release Date

1999-01-28

Peptides

Glycine--tRNA ligase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glycine--tRNA ligase

Related Entries With Identical Sequence