SMTL ID : 1ghq.1

CR2-C3D COMPLEX STRUCTURE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

hetero-1-2-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: E.117 Chain B: G.85 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.117, A:E.117, H2O.12, H2O.19 ZN.3: 1 residues within 4Å: Chain B: K.82 No protein-ligand interaction detected (PLIP)

2 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)

NDG.2: 2 residues within 4Å: Chain B: T.101, N.102 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:T.101 Hydrogen bonds: B:N.102 NDG.4: 6 residues within 4Å: Chain A: P.173, G.174, T.177 Chain C: T.101, N.102, F.131 6 PLIP interactions: 2 interactions with chain A, 2 interactions with chain C, 2 interactions with chain B Hydrogen bonds: A:T.177, A:T.177, C:N.102 Hydrophobic interactions: C:T.101 Water bridges: B:T.101, B:T.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Szakonyi, G. et al., Structure of complement receptor 2 in complex with its C3d ligand. Science (2001)

Release Date

2001-06-13

Peptides

COMPLEMENT C3: A
CR2/CD121/C3D/EPSTEIN-BARR VIRUS RECEPTOR: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

COMPLEMENT C3

CR2/CD121/C3D/EPSTEIN-BARR VIRUS RECEPTOR