- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 4 x OXL: OXALATE ION(Non-covalent)
OXL.2: 12 residues within 4Å:- Chain A: Y.90, R.143, L.145, K.161, E.233, D.234, D.257, N.396, N.441, N.442
- Ligands: NAP.1, MN.3
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:N.396, A:N.441, A:N.442
- Salt bridges: A:R.143, A:K.161
OXL.5: 12 residues within 4Å:- Chain B: Y.90, R.143, L.145, K.161, E.233, D.234, D.257, N.396, N.441, N.442
- Ligands: NAP.4, MN.6
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:N.396, B:N.441, B:N.442
- Salt bridges: B:R.143, B:K.161, B:K.161
OXL.9: 11 residues within 4Å:- Chain C: R.143, L.145, K.161, E.233, D.234, D.257, N.396, N.441, N.442
- Ligands: NAP.8, MN.10
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:Y.90, C:N.396, C:N.441, C:N.442
- Water bridges: C:K.161
- Salt bridges: C:R.143, C:K.161
OXL.20: 14 residues within 4Å:- Chain D: Y.90, R.143, L.145, K.161, E.233, D.234, D.256, D.257, N.396, N.441, N.442
- Ligands: NAP.19, MN.21, NA.22
8 PLIP interactions:8 interactions with chain D- Hydrogen bonds: D:Y.90, D:N.396, D:N.441, D:N.442
- Water bridges: D:K.161
- Salt bridges: D:R.143, D:K.161, D:K.161
- 4 x MN: MANGANESE (II) ION(Non-covalent)
MN.3: 5 residues within 4Å:- Chain A: K.161, E.233, D.234, D.257
- Ligands: OXL.2
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:E.233, A:D.234, A:D.257
MN.6: 7 residues within 4Å:- Chain B: R.143, K.161, E.233, D.234, D.257, N.442
- Ligands: OXL.5
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:E.233, B:D.234, B:D.257
MN.10: 5 residues within 4Å:- Chain C: K.161, E.233, D.234, D.257
- Ligands: OXL.9
4 PLIP interactions:3 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:E.233, C:D.234, C:D.257, H2O.154
MN.21: 4 residues within 4Å:- Chain D: E.233, D.234, D.257
- Ligands: OXL.20
4 PLIP interactions:3 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:E.233, D:D.234, D:D.257, H2O.203
- 5 x CL: CHLORIDE ION(Non-functional Binders)
CL.7: 3 residues within 4Å:- Chain B: G.15, M.16, Q.42
Ligand excluded by PLIPCL.15: 4 residues within 4Å:- Chain C: S.55, D.56, L.57, L.96
Ligand excluded by PLIPCL.16: 2 residues within 4Å:- Chain C: Q.99, S.399
Ligand excluded by PLIPCL.17: 4 residues within 4Å:- Chain C: E.83, R.486, P.490, L.491
Ligand excluded by PLIPCL.18: 3 residues within 4Å:- Chain C: Q.39, D.536, Y.537
Ligand excluded by PLIP- 6 x NA: SODIUM ION(Non-functional Binders)
NA.11: 4 residues within 4Å:- Chain C: F.50, E.51, L.53, R.59
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:E.51, C:R.59
NA.12: 4 residues within 4Å:- Chain C: W.320, M.321, I.328, F.342
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:I.328
NA.13: 2 residues within 4Å:- Chain C: N.249, H.460
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:H.460
NA.14: 4 residues within 4Å:- Chain C: Y.60, M.64, Y.101, V.159
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:Y.101, C:Y.101
NA.22: 5 residues within 4Å:- Chain D: Y.90, T.91, N.396, N.441
- Ligands: OXL.20
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:N.441, D:N.441
NA.23: 3 residues within 4Å:- Chain D: G.15, M.16, Q.42
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:Q.42
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yang, Z. et al., Structural Studies of the Pigeon Cytosolic Nadp+ -Dependent Malic Enzyme. Protein Sci. (2002)
- Release Date
- 2002-05-23
- Peptides
- MALIC ENZYME: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 4 x OXL: OXALATE ION(Non-covalent)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 5 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yang, Z. et al., Structural Studies of the Pigeon Cytosolic Nadp+ -Dependent Malic Enzyme. Protein Sci. (2002)
- Release Date
- 2002-05-23
- Peptides
- MALIC ENZYME: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D