SMTL ID : 1gt7.3 (4 other biounits)

L-rhamnulose-1-phosphate aldolase from Escherichia coli

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-octamer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.141, H.143, H.212 Ligands: PGH.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.141, A:H.143, A:H.212, H2O.7 ZN.3: 4 residues within 4Å: Chain B: H.141, H.143, H.212 Ligands: PGH.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.141, B:H.143, B:H.212, H2O.14 ZN.5: 4 residues within 4Å: Chain C: H.141, H.143, H.212 Ligands: PGH.6 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.141, C:H.143, C:H.212, H2O.21 ZN.7: 4 residues within 4Å: Chain D: H.141, H.143, H.212 Ligands: PGH.8 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.141, D:H.143, D:H.212, H2O.27 ZN.9: 4 residues within 4Å: Chain E: H.141, H.143, H.212 Ligands: PGH.10 4 PLIP interactions: 3 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:H.141, E:H.143, E:H.212, H2O.34 ZN.11: 4 residues within 4Å: Chain F: H.141, H.143, H.212 Ligands: PGH.12 4 PLIP interactions: 3 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:H.141, F:H.143, F:H.212, H2O.41 ZN.13: 4 residues within 4Å: Chain G: H.141, H.143, H.212 Ligands: PGH.14 4 PLIP interactions: 3 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:H.141, G:H.143, G:H.212, H2O.48 ZN.15: 4 residues within 4Å: Chain H: H.141, H.143, H.212 Ligands: PGH.16 4 PLIP interactions: 3 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:H.141, H:H.143, H:H.212, H2O.54

8 x PGH: PHOSPHOGLYCOLOHYDROXAMIC ACID(Non-covalent)

PGH.2: 14 residues within 4Å: Chain A: N.29, G.30, G.31, N.32, G.74, S.75, G.76, T.115, S.116, E.117, H.141, H.143, H.212 Ligands: ZN.1 10 PLIP interactions: 9 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.29, A:N.29, A:G.31, A:N.32, A:G.76, A:K.77, A:S.116, A:S.116, A:E.117 Water bridges: B:E.171 PGH.4: 14 residues within 4Å: Chain B: N.29, G.30, G.31, N.32, G.74, S.75, G.76, T.115, S.116, E.117, H.141, H.143, H.212 Ligands: ZN.3 9 PLIP interactions: 8 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:N.29, B:N.29, B:G.31, B:N.32, B:G.76, B:K.77, B:S.116, B:S.116 Water bridges: C:E.171 PGH.6: 14 residues within 4Å: Chain C: N.29, G.30, G.31, N.32, G.74, S.75, G.76, T.115, S.116, E.117, H.141, H.143, H.212 Ligands: ZN.5 10 PLIP interactions: 9 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:N.29, C:N.29, C:G.31, C:N.32, C:G.76, C:K.77, C:T.115, C:S.116, C:S.116 Water bridges: D:E.171 PGH.8: 14 residues within 4Å: Chain D: N.29, G.30, G.31, N.32, G.74, S.75, G.76, T.115, S.116, E.117, H.141, H.143, H.212 Ligands: ZN.7 9 PLIP interactions: 1 interactions with chain A, 8 interactions with chain D Water bridges: A:E.171 Hydrogen bonds: D:N.29, D:N.29, D:G.31, D:N.32, D:G.76, D:S.116, D:S.116, D:E.117 PGH.10: 14 residues within 4Å: Chain E: N.29, G.30, G.31, N.32, G.74, S.75, G.76, T.115, S.116, E.117, H.141, H.143, H.212 Ligands: ZN.9 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:N.29, E:N.29, E:G.31, E:N.32, E:G.76, E:T.115, E:S.116, E:S.116 PGH.12: 14 residues within 4Å: Chain F: N.29, G.30, G.31, N.32, G.74, S.75, G.76, T.115, S.116, E.117, H.141, H.143, H.212 Ligands: ZN.11 10 PLIP interactions: 10 interactions with chain F Hydrogen bonds: F:N.29, F:N.29, F:G.31, F:N.32, F:G.76, F:K.77, F:T.115, F:S.116, F:S.116, F:E.117 PGH.14: 14 residues within 4Å: Chain G: N.29, G.30, G.31, N.32, G.74, S.75, G.76, T.115, S.116, E.117, H.141, H.143, H.212 Ligands: ZN.13 9 PLIP interactions: 9 interactions with chain G Hydrogen bonds: G:N.29, G:N.29, G:G.31, G:N.32, G:G.76, G:K.77, G:S.116, G:S.116, G:E.117 PGH.16: 14 residues within 4Å: Chain H: N.29, G.30, G.31, N.32, G.74, S.75, G.76, T.115, S.116, E.117, H.141, H.143, H.212 Ligands: ZN.15 9 PLIP interactions: 9 interactions with chain H Hydrogen bonds: H:N.29, H:N.29, H:G.31, H:N.32, H:G.76, H:K.77, H:S.116, H:S.116, H:H.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kroemer, M. et al., The Structure of L-Rhamnulose-1-Phosphate Aldolase (Class II) Solved by Low-Resolution Sir Phasing and 20-Fold Ncs Averaging. Acta Crystallogr.,Sect.D (2002)

Release Date

2002-05-03

Peptides

RHAMNULOSE-1-PHOSPHATE ALDOLASE: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

B
J

C
K

D
L

E
M

F
N

G
O

H
P

RHAMNULOSE-1-PHOSPHATE ALDOLASE

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