- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x FA1: 2,3 -ANHYDRO-QUINIC ACID(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 10 residues within 4Å:- Chain A: P.15, N.16, L.17, L.19, L.20, Y.28
- Chain B: D.92, T.96
- Ligands: FA1.1, TLA.3
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:P.15
- Water bridges: A:N.16, A:G.21, A:R.23, A:R.23
GOL.6: 8 residues within 4Å:- Chain B: P.15, N.16, L.17, L.19, L.20, Y.28
- Ligands: FA1.5, TLA.7
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:P.15
- Water bridges: B:G.21, B:R.23, B:R.23, C:D.92
GOL.10: 10 residues within 4Å:- Chain A: D.92, T.96
- Chain C: P.15, N.16, L.17, L.19, L.20, Y.28
- Ligands: FA1.9, TLA.11
7 PLIP interactions:6 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: C:P.15, A:D.92
- Water bridges: C:N.16, C:L.19, C:G.21, C:R.23, C:R.23
GOL.13: 10 residues within 4Å:- Chain D: P.15, N.16, L.17, L.19, L.20, Y.28
- Chain E: D.92, T.96
- Ligands: FA1.12, TLA.14
7 PLIP interactions:6 interactions with chain D, 1 interactions with chain E- Hydrogen bonds: D:P.15, E:D.92
- Water bridges: D:N.16, D:L.19, D:G.21, D:R.23, D:R.23
GOL.16: 9 residues within 4Å:- Chain E: P.15, N.16, L.17, L.19, L.20, Y.28
- Chain F: D.92
- Ligands: FA1.15, TLA.17
5 PLIP interactions:5 interactions with chain E- Hydrogen bonds: E:P.15
- Water bridges: E:N.16, E:G.21, E:R.23, E:R.23
GOL.19: 8 residues within 4Å:- Chain F: P.15, N.16, L.17, L.19, L.20, Y.28
- Ligands: FA1.18, TLA.20
5 PLIP interactions:5 interactions with chain F- Hydrogen bonds: F:P.15, F:L.17
- Water bridges: F:N.16, F:R.23, F:R.23
GOL.22: 9 residues within 4Å:- Chain G: N.16, L.17, L.19, L.20, Y.28
- Chain H: D.92, T.96
- Ligands: FA1.21, TLA.23
5 PLIP interactions:4 interactions with chain G, 1 interactions with chain H- Hydrogen bonds: G:P.15
- Water bridges: G:G.21, G:R.23, G:R.23, H:D.92
GOL.25: 10 residues within 4Å:- Chain H: P.15, N.16, L.17, L.19, L.20, Y.28
- Chain I: D.92, T.96
- Ligands: FA1.24, TLA.26
7 PLIP interactions:6 interactions with chain H, 1 interactions with chain I- Hydrogen bonds: H:P.15, H:N.16
- Water bridges: H:L.19, H:G.21, H:R.23, H:R.23, I:D.92
GOL.29: 10 residues within 4Å:- Chain G: D.92, T.96
- Chain I: P.15, N.16, L.17, L.19, L.20, Y.28
- Ligands: FA1.28, TLA.30
5 PLIP interactions:5 interactions with chain I- Hydrogen bonds: I:P.15
- Water bridges: I:N.16, I:G.21, I:R.23, I:R.23
GOL.32: 10 residues within 4Å:- Chain J: P.15, N.16, L.17, L.19, L.20, Y.28
- Chain K: D.92, T.96
- Ligands: FA1.31, TLA.33
5 PLIP interactions:5 interactions with chain J- Hydrogen bonds: J:P.15
- Water bridges: J:N.16, J:G.21, J:R.23, J:R.23
GOL.35: 9 residues within 4Å:- Chain K: P.15, N.16, L.17, L.19, L.20, Y.28
- Chain L: D.92
- Ligands: FA1.34, TLA.36
6 PLIP interactions:5 interactions with chain K, 1 interactions with chain L- Hydrogen bonds: K:P.15, L:D.92
- Water bridges: K:N.16, K:G.21, K:R.23, K:R.23
GOL.38: 9 residues within 4Å:- Chain J: D.92
- Chain L: P.15, N.16, L.17, L.19, L.20, Y.28
- Ligands: FA1.37, TLA.39
5 PLIP interactions:5 interactions with chain L- Hydrogen bonds: L:P.15
- Water bridges: L:N.16, L:Q.22, L:R.23, L:R.23
- 12 x TLA: L(+)-TARTARIC ACID(Non-covalent)
TLA.3: 9 residues within 4Å:- Chain A: R.23, Q.24, Y.28, R.113, R.117
- Chain B: D.92, N.95
- Ligands: FA1.1, GOL.2
8 PLIP interactions:2 interactions with chain B, 6 interactions with chain A- Hydrogen bonds: B:D.92, B:N.95, A:R.23, A:R.23, A:R.117
- Salt bridges: A:R.23, A:R.113, A:R.117
TLA.7: 8 residues within 4Å:- Chain B: R.23, Q.24, Y.28, R.113, R.117
- Chain C: D.92, N.95
- Ligands: GOL.6
11 PLIP interactions:9 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: B:R.23, B:R.23, B:Y.28, B:R.113, B:R.117, C:N.95, C:N.95
- Water bridges: B:R.117
- Salt bridges: B:R.23, B:R.113, B:R.117
TLA.11: 8 residues within 4Å:- Chain A: D.92, N.95
- Chain C: R.23, Q.24, Y.28, R.113, R.117
- Ligands: GOL.10
8 PLIP interactions:1 interactions with chain A, 7 interactions with chain C- Hydrogen bonds: A:N.95, C:R.23, C:R.23, C:R.117
- Water bridges: C:R.113
- Salt bridges: C:R.23, C:R.113, C:R.117
TLA.14: 9 residues within 4Å:- Chain D: R.23, Q.24, Y.28, R.113, R.117
- Chain E: D.92, N.95
- Ligands: FA1.12, GOL.13
9 PLIP interactions:1 interactions with chain E, 8 interactions with chain D- Hydrogen bonds: E:N.95, D:R.23, D:R.23, D:Y.28, D:R.113, D:R.117
- Salt bridges: D:R.23, D:R.113, D:R.117
TLA.17: 8 residues within 4Å:- Chain E: R.23, Q.24, Y.28, R.113, R.117
- Chain F: D.92, N.95
- Ligands: GOL.16
11 PLIP interactions:8 interactions with chain E, 3 interactions with chain F- Hydrogen bonds: E:R.23, E:R.23, E:R.113, E:R.117, F:D.92, F:N.95, F:N.95
- Water bridges: E:R.117
- Salt bridges: E:R.23, E:R.113, E:R.117
TLA.20: 8 residues within 4Å:- Chain D: D.92, N.95
- Chain F: R.23, Q.24, Y.28, R.113, R.117
- Ligands: GOL.19
10 PLIP interactions:3 interactions with chain D, 7 interactions with chain F- Hydrogen bonds: D:D.92, D:N.95, D:N.95, F:R.23, F:R.23, F:R.117
- Water bridges: F:R.117
- Salt bridges: F:R.23, F:R.113, F:R.117
TLA.23: 9 residues within 4Å:- Chain G: R.23, Q.24, Y.28, R.113, R.117
- Chain H: D.92, N.95
- Ligands: FA1.21, GOL.22
10 PLIP interactions:9 interactions with chain G, 1 interactions with chain H- Hydrogen bonds: G:R.23, G:R.23, G:Y.28, G:R.113, G:R.117, H:N.95
- Water bridges: G:R.117
- Salt bridges: G:R.23, G:R.113, G:R.117
TLA.26: 9 residues within 4Å:- Chain H: R.23, Q.24, Y.28, R.113, R.117
- Chain I: D.92, N.95
- Ligands: FA1.24, GOL.25
10 PLIP interactions:8 interactions with chain H, 2 interactions with chain I- Hydrogen bonds: H:R.23, H:R.23, H:Y.28, H:R.113, H:R.117, I:N.95, I:N.95
- Salt bridges: H:R.23, H:R.113, H:R.117
TLA.30: 8 residues within 4Å:- Chain G: D.92, N.95
- Chain I: R.23, Q.24, Y.28, R.113, R.117
- Ligands: GOL.29
8 PLIP interactions:6 interactions with chain I, 2 interactions with chain G- Hydrogen bonds: I:R.23, I:R.23, I:R.117, G:D.92, G:N.95
- Salt bridges: I:R.23, I:R.113, I:R.117
TLA.33: 8 residues within 4Å:- Chain J: R.23, Q.24, Y.28, R.113, R.117
- Chain K: D.92, N.95
- Ligands: GOL.32
12 PLIP interactions:8 interactions with chain J, 4 interactions with chain K- Hydrogen bonds: J:R.23, J:R.23, J:Y.28, J:R.113, J:R.117, K:D.92, K:N.95, K:N.95
- Salt bridges: J:R.23, J:R.113, J:R.117
- Water bridges: K:D.98
TLA.36: 9 residues within 4Å:- Chain K: R.23, Q.24, Y.28, R.113, R.117
- Chain L: D.92, N.95
- Ligands: FA1.34, GOL.35
10 PLIP interactions:8 interactions with chain K, 2 interactions with chain L- Hydrogen bonds: K:R.23, K:R.23, K:Y.28, K:R.113, K:R.117, L:N.95, L:N.95
- Salt bridges: K:R.23, K:R.113, K:R.117
TLA.39: 8 residues within 4Å:- Chain J: D.92, N.95
- Chain L: R.23, Q.24, Y.28, R.113, R.117
- Ligands: GOL.38
8 PLIP interactions:6 interactions with chain L, 2 interactions with chain J- Hydrogen bonds: L:R.23, L:R.23, L:R.117, J:D.92, J:N.95
- Salt bridges: L:R.23, L:R.113, L:R.117
- 4 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
TRS.4: 9 residues within 4Å:- Chain A: E.59, T.86, S.87
- Chain B: E.59, T.86, S.87
- Chain C: E.59, T.86, S.87
9 PLIP interactions:3 interactions with chain C, 3 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: C:T.86, A:T.86, A:T.86, B:E.59, B:T.86
- Water bridges: C:E.59, C:V.88, A:V.88, B:V.88
TRS.8: 9 residues within 4Å:- Chain D: E.59, T.86, S.87
- Chain E: E.59, T.86, S.87
- Chain F: E.59, T.86, S.87
9 PLIP interactions:3 interactions with chain E, 2 interactions with chain D, 4 interactions with chain F- Hydrogen bonds: E:E.59, E:T.86, D:T.86, F:T.86, F:T.86
- Water bridges: E:V.88, D:V.88, F:E.59, F:V.88
TRS.27: 9 residues within 4Å:- Chain G: E.59, T.86, S.87
- Chain H: E.59, T.86, S.87
- Chain I: E.59, T.86, S.87
10 PLIP interactions:3 interactions with chain G, 2 interactions with chain H, 5 interactions with chain I- Hydrogen bonds: G:T.86, G:T.86, H:T.86, I:E.59, I:T.86, I:T.86
- Water bridges: G:V.88, H:V.88, I:E.59, I:V.88
TRS.40: 9 residues within 4Å:- Chain J: E.59, T.86, S.87
- Chain K: E.59, T.86, S.87
- Chain L: E.59, T.86, S.87
10 PLIP interactions:3 interactions with chain K, 3 interactions with chain J, 4 interactions with chain L- Hydrogen bonds: K:E.59, K:T.86, J:T.86, J:T.86, L:T.86, L:T.86
- Water bridges: K:V.88, J:V.88, L:E.59, L:V.88
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Roszak, A.W. et al., The Structure and Mechanism of the Type II Dehydroquinase from Streptomyces Coelicolor. Structure (2002)
- Release Date
- 2002-04-12
- Peptides
- 3-DEHYDROQUINATE DEHYDRATASE: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
L
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-12-mer
- Ligands
- 12 x FA1: 2,3 -ANHYDRO-QUINIC ACID(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- 12 x TLA: L(+)-TARTARIC ACID(Non-covalent)
- 4 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Roszak, A.W. et al., The Structure and Mechanism of the Type II Dehydroquinase from Streptomyces Coelicolor. Structure (2002)
- Release Date
- 2002-04-12
- Peptides
- 3-DEHYDROQUINATE DEHYDRATASE: ABCDEFGHIJKL
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
L