SMTL ID : 1gyc.1

CRYSTAL STRUCTURE DETERMINATION AT ROOM TEMPERATURE OF A LACCASE FROM TRAMETES VERSICOLOR IN ITS OXIDISED FORM CONTAINING A FULL COMPLEMENT OF COPPER IONS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 9 residues within 4Å: Chain A: R.22, D.23, N.54, T.56, M.57, H.153, T.154, A.155, L.158 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.22, A:A.155 Hydrogen bonds: A:A.155 NAG-NAG.2: 5 residues within 4Å: Chain A: G.215, N.217, Q.252, V.297, I.298 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.297 NAG-NAG.3: 4 residues within 4Å: Chain A: N.327, T.383, P.385, N.436 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:N.327 Water bridges: A:L.326

4 x CU: COPPER (II) ION(Non-covalent)

CU.4: 6 residues within 4Å: Chain A: H.64, H.66, H.109, H.454 Ligands: CU.5, CU.6 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.66, A:H.109, A:H.454, H2O.2 CU.5: 6 residues within 4Å: Chain A: H.111, H.398, H.400, H.452 Ligands: CU.4, CU.6 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.111, A:H.400, A:H.452, H2O.2 CU.6: 6 residues within 4Å: Chain A: H.64, H.66, H.398, H.400 Ligands: CU.4, CU.5 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.64, A:H.398, H2O.12 CU.7: 5 residues within 4Å: Chain A: H.395, C.453, I.455, H.458, F.463 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.395, A:C.453, A:H.458

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.8: 3 residues within 4Å: Chain A: N.249, N.251, Q.252 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.252 NAG.9: 4 residues within 4Å: Chain A: N.333, T.335, N.336, F.338 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:T.335 Hydrogen bonds: A:T.335, A:N.336 Water bridges: A:N.333, A:N.333, A:T.335 NAG.10: 3 residues within 4Å: Chain A: A.329, N.340, N.341 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.329 Hydrogen bonds: A:N.341

2 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.11: 5 residues within 4Å: Chain A: F.162, F.337, P.391, G.392, H.458 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.337 IPA.12: 4 residues within 4Å: Chain A: R.161, N.336, E.460, A.461 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.161, A:R.161, A:E.460

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Piontek, K. et al., Crystal Structure of a Laccase from the Fungus Trametes Versicolor at 1.90-A Resolution Containing a Full Complement of Coppers. J.Biol.Chem. (2002)

Release Date

2002-08-22

Peptides

LACCASE 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LACCASE 2