SMTL ID : 1gyq.1

CRYSTAL STRUCTURE OF GLYCOSOMAL GLYCERALDEHYDE FROM LEISHMANIA MEXICANA IN COMPLEX WITH N6-BENZYL-NAD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

homo-tetramer

Ligands

4 x NBD: N6-BENZYL-NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NBD.1: 25 residues within 4Å: Chain A: N.8, G.9, F.10, G.11, R.12, I.13, V.37, D.38, M.39, A.90, Q.91, R.92, S.110, T.111, G.112, L.113, F.114, S.134, A.135, C.166, A.198, N.335, E.336, Y.339 Chain B: V.206 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.13, A:R.92, A:Y.339 Hydrogen bonds: A:N.8, A:F.10, A:R.12, A:I.13, A:D.38, A:Q.91, A:N.335, A:E.336 NBD.2: 24 residues within 4Å: Chain A: V.206 Chain B: N.8, G.9, F.10, G.11, R.12, I.13, V.37, D.38, M.39, Q.91, R.92, S.110, T.111, G.112, L.113, F.114, S.134, A.135, C.166, A.198, N.335, E.336, Y.339 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:I.13, B:Y.339 Hydrogen bonds: B:N.8, B:F.10, B:R.12, B:I.13, B:Q.91, B:N.335, B:E.336 NBD.3: 25 residues within 4Å: Chain C: N.8, G.9, F.10, G.11, R.12, I.13, V.37, D.38, M.39, A.90, Q.91, R.92, S.110, T.111, G.112, L.113, F.114, S.134, A.135, C.166, A.198, N.335, E.336, Y.339 Chain D: V.206 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:I.13, C:A.90, C:L.113, C:Y.339 Hydrogen bonds: C:N.8, C:F.10, C:R.12, C:I.13, C:Q.91, C:N.335, C:E.336, C:E.336 NBD.4: 24 residues within 4Å: Chain C: V.206 Chain D: N.8, G.9, F.10, G.11, R.12, I.13, V.37, D.38, M.39, A.90, Q.91, S.110, T.111, G.112, L.113, F.114, S.134, A.135, C.166, A.198, N.335, E.336, Y.339 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:I.13, D:A.90, D:Y.339 Hydrogen bonds: D:N.8, D:F.10, D:R.12, D:I.13, D:Q.91, D:N.335, D:E.336, D:E.336

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aronov, A.M. et al., Structure-based design of submicromolar, biologically active inhibitors of trypanosomatid glyceraldehyde-3-phosphate dehydrogenase. Proc.Natl.Acad.Sci.USA (1999)

Release Date

1999-03-16

Peptides

PROTEIN (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE): ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

PROTEIN (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE)

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