SMTL ID : 1gzf.3 (3 other biounits)

Structure of the Clostridium botulinum C3 exoenzyme (wild-type) in complex with NAD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x NIR: 3-(AMINOCARBONYL)-1-[(3R,4S,5R)-3,4-DIHYDROXY-5-METHYLTETRAHYDRO-2-FURANYL]PYRIDINIUM(Non-covalent)

NIR.1: 11 residues within 4Å: Chain A: A.43, R.88, G.89, S.134, T.135, S.136, F.143, A.170, G.171, E.174 Ligands: ADP.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.43, A:F.143 Hydrogen bonds: A:G.89, A:G.89, A:E.174 Water bridges: A:F.169

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 12 residues within 4Å: Chain A: S.44, N.47, R.51, R.88, D.90, D.91, A.93, Y.94, R.127, E.129, R.146 Ligands: NIR.1 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:N.47, A:R.51, A:D.90, A:D.91, A:D.91, A:R.127, A:E.129, A:R.146 Water bridges: A:R.88, A:S.134 Salt bridges: A:R.51, A:R.88, A:R.88, A:R.146 pi-Cation interactions: A:R.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Menetrey, J. et al., Nad Binding Induces Conformational Changes in Rho Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme. J.Biol.Chem. (2002)

Release Date

2002-08-29

Peptides

MONO-ADP-RIBOSYLTRANSFERASE C3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

MONO-ADP-RIBOSYLTRANSFERASE C3

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