- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GCV: 4-O-methyl-alpha-D-glucopyranuronic acid(Non-covalent)
- 28 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 5 residues within 4Å:- Chain A: D.446, R.447
- Chain B: R.185, T.445
- Ligands: EDO.34
Ligand excluded by PLIPEDO.3: 8 residues within 4Å:- Chain A: H.126, R.129, S.144, R.464, W.467, I.471
- Ligands: EDO.13, EDO.14
Ligand excluded by PLIPEDO.4: 7 residues within 4Å:- Chain A: Y.4, D.5, L.8, D.188, R.191, I.192, W.449
Ligand excluded by PLIPEDO.5: 7 residues within 4Å:- Chain A: D.174, S.177, Y.181
- Chain B: G.451, Q.640, L.644
- Ligands: EDO.11
Ligand excluded by PLIPEDO.6: 4 residues within 4Å:- Chain A: Q.623, D.627, K.642, Q.646
Ligand excluded by PLIPEDO.7: 5 residues within 4Å:- Chain A: R.47, P.184, T.187, D.188, R.191
Ligand excluded by PLIPEDO.8: 4 residues within 4Å:- Chain A: R.88, L.98, S.141, S.143
Ligand excluded by PLIPEDO.9: 6 residues within 4Å:- Chain A: R.27, H.28, P.56, I.57, V.58, R.60
Ligand excluded by PLIPEDO.10: 5 residues within 4Å:- Chain A: L.256, G.297, R.298, D.299, E.302
Ligand excluded by PLIPEDO.11: 6 residues within 4Å:- Chain A: L.172, D.174, A.183, R.185, Y.186
- Ligands: EDO.5
Ligand excluded by PLIPEDO.12: 5 residues within 4Å:- Chain A: N.555, T.557, F.589, H.590, H.591
Ligand excluded by PLIPEDO.13: 9 residues within 4Å:- Chain A: Y.97, Y.122, H.126, R.129, S.195, L.196, G.197, W.467
- Ligands: EDO.3
Ligand excluded by PLIPEDO.14: 6 residues within 4Å:- Chain A: H.126, R.129, L.130, R.464, E.479
- Ligands: EDO.3
Ligand excluded by PLIPEDO.15: 7 residues within 4Å:- Chain A: T.378, N.379, M.380, I.424, T.432, H.434, T.435
Ligand excluded by PLIPEDO.22: 5 residues within 4Å:- Chain B: R.464, I.471, T.475, E.479
- Ligands: EDO.28
Ligand excluded by PLIPEDO.23: 4 residues within 4Å:- Chain B: Q.623, D.627, K.642, Q.646
Ligand excluded by PLIPEDO.24: 5 residues within 4Å:- Chain B: R.47, P.184, T.187, D.188, R.191
Ligand excluded by PLIPEDO.25: 4 residues within 4Å:- Chain B: N.555, T.557, H.590, H.591
Ligand excluded by PLIPEDO.26: 7 residues within 4Å:- Chain B: Y.4, D.5, L.8, D.188, R.191, I.192, W.449
Ligand excluded by PLIPEDO.27: 2 residues within 4Å:- Chain B: G.416, E.417
Ligand excluded by PLIPEDO.28: 9 residues within 4Å:- Chain B: Y.97, H.126, R.129, S.144, R.464, W.467, I.471
- Ligands: EDO.22, EDO.29
Ligand excluded by PLIPEDO.29: 9 residues within 4Å:- Chain B: Y.97, Y.122, H.126, R.129, S.195, L.196, G.197, W.467
- Ligands: EDO.28
Ligand excluded by PLIPEDO.30: 4 residues within 4Å:- Chain B: N.357, F.368, S.407, T.410
Ligand excluded by PLIPEDO.31: 4 residues within 4Å:- Chain B: Q.261, N.305, M.306, A.309
Ligand excluded by PLIPEDO.32: 2 residues within 4Å:- Chain B: R.147, E.426
Ligand excluded by PLIPEDO.33: 6 residues within 4Å:- Chain B: V.31, G.33, A.42, A.59, R.60, D.61
Ligand excluded by PLIPEDO.34: 5 residues within 4Å:- Chain B: L.172, D.174, R.185, Y.186
- Ligands: EDO.2
Ligand excluded by PLIPEDO.35: 5 residues within 4Å:- Chain B: S.144, A.145, R.147, W.467, D.468
Ligand excluded by PLIP- 10 x CO: COBALT (II) ION(Non-covalent)
CO.16: 4 residues within 4Å:- Chain A: M.498, A.621, M.622, T.625
No protein-ligand interaction detected (PLIP)CO.17: 5 residues within 4Å:- Chain A: G.3, N.448, P.453, Q.456, R.637
No protein-ligand interaction detected (PLIP)CO.18: 3 residues within 4Å:- Chain A: N.603, W.605, R.669
No protein-ligand interaction detected (PLIP)CO.19: 4 residues within 4Å:- Chain A: N.158, N.160, V.162, W.698
No protein-ligand interaction detected (PLIP)CO.20: 3 residues within 4Å:- Chain A: Q.149, H.150, H.434
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.150, A:H.434, H2O.32
CO.36: 4 residues within 4Å:- Chain B: M.498, A.621, M.622, T.625
No protein-ligand interaction detected (PLIP)CO.37: 5 residues within 4Å:- Chain B: G.3, N.448, P.453, Q.456, R.637
No protein-ligand interaction detected (PLIP)CO.38: 4 residues within 4Å:- Chain B: N.158, N.160, V.162, W.698
No protein-ligand interaction detected (PLIP)CO.39: 3 residues within 4Å:- Chain B: N.603, W.605, R.669
No protein-ligand interaction detected (PLIP)CO.40: 3 residues within 4Å:- Chain B: Q.149, H.150, H.434
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:H.150, B:H.434, H2O.65
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nagy, T. et al., The Alpha-Glucuronidase,Glca67A,of Cellvibrio Japonicus Utilizes the Carboxylate and Methyl Groups of Aldobiouronic Acid as Important Substrate Recognition Determinants. J.Biol.Chem. (2003)
- Release Date
- 2003-05-01
- Peptides
- ALPHA-GLUCURONIDASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GCV: 4-O-methyl-alpha-D-glucopyranuronic acid(Non-covalent)
- 28 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 10 x CO: COBALT (II) ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nagy, T. et al., The Alpha-Glucuronidase,Glca67A,of Cellvibrio Japonicus Utilizes the Carboxylate and Methyl Groups of Aldobiouronic Acid as Important Substrate Recognition Determinants. J.Biol.Chem. (2003)
- Release Date
- 2003-05-01
- Peptides
- ALPHA-GLUCURONIDASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B