SMTL ID : 1h5q.3 (2 other biounits)

Mannitol dehydrogenase from Agaricus bisporus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-tetramer

Ligands

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 26 residues within 4Å: Chain A: G.21, N.23, R.24, G.25, I.26, Y.45, R.46, S.47, A.48, C.71, D.72, V.73, N.99, A.100, G.101, V.102, V.122, T.150, S.151, S.152, Y.172, K.176, P.202, G.203, V.205, Q.209 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:I.26, A:P.202 Hydrogen bonds: A:N.23, A:R.24, A:I.26, A:R.46, A:S.47, A:A.48, A:D.72, A:D.72, A:V.73, A:N.99, A:N.99, A:G.101, A:K.176, A:V.205, A:Q.209, A:Q.209 Water bridges: A:R.24, A:R.24, A:R.24, A:R.24, A:G.27, A:G.27, A:R.46, A:R.46, A:G.101, A:V.102, A:V.205, A:T.207, A:T.207 Salt bridges: A:R.24, A:R.24 NAP.3: 28 residues within 4Å: Chain B: G.21, N.23, R.24, G.25, I.26, Y.45, R.46, S.47, A.48, C.71, D.72, V.73, N.99, A.100, G.101, V.102, V.122, T.150, S.151, S.152, Y.172, K.176, P.202, G.203, Y.204, V.205, T.207, Q.209 35 PLIP interactions: 35 interactions with chain B Hydrophobic interactions: B:I.26, B:P.202 Hydrogen bonds: B:N.23, B:I.26, B:R.46, B:R.46, B:S.47, B:A.48, B:D.72, B:V.73, B:N.99, B:N.99, B:G.101, B:Y.172, B:K.176, B:V.205, B:Q.209, B:Q.209 Water bridges: B:R.24, B:R.24, B:R.24, B:R.24, B:R.24, B:G.27, B:G.27, B:R.46, B:S.47, B:G.101, B:V.102, B:V.205, B:T.207, B:T.207, B:T.207 Salt bridges: B:R.24, B:R.24 NAP.5: 27 residues within 4Å: Chain C: G.21, N.23, R.24, G.25, I.26, Y.45, R.46, S.47, A.48, C.71, D.72, V.73, N.99, A.100, G.101, V.102, V.122, T.150, S.151, S.152, Y.172, K.176, P.202, G.203, V.205, T.207, Q.209 34 PLIP interactions: 34 interactions with chain C Hydrophobic interactions: C:I.26, C:P.202 Hydrogen bonds: C:N.23, C:R.24, C:I.26, C:R.46, C:S.47, C:A.48, C:D.72, C:D.72, C:V.73, C:N.99, C:N.99, C:G.101, C:K.176, C:V.205, C:Q.209 Water bridges: C:R.24, C:R.24, C:R.24, C:R.24, C:R.24, C:G.27, C:G.27, C:R.46, C:R.46, C:S.47, C:G.101, C:V.102, C:V.205, C:T.207, C:T.207 Salt bridges: C:R.24, C:R.24 NAP.6: 27 residues within 4Å: Chain D: G.21, N.23, R.24, G.25, I.26, Y.45, R.46, S.47, A.48, C.71, D.72, V.73, N.99, A.100, G.101, V.102, V.122, T.150, S.151, S.152, Y.172, K.176, P.202, G.203, V.205, T.207, Q.209 35 PLIP interactions: 35 interactions with chain D Hydrophobic interactions: D:I.26, D:P.202 Hydrogen bonds: D:N.23, D:R.24, D:R.24, D:I.26, D:R.46, D:S.47, D:A.48, D:D.72, D:V.73, D:N.99, D:N.99, D:G.101, D:Y.172, D:K.176, D:V.205, D:Q.209, D:Q.209 Water bridges: D:R.24, D:R.24, D:G.27, D:G.27, D:R.46, D:R.46, D:R.46, D:R.46, D:G.101, D:V.102, D:V.205, D:T.207, D:T.207, D:T.207 Salt bridges: D:R.24, D:R.24

2 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 4 residues within 4Å: Chain A: I.157, W.265 Chain C: I.157, W.265 No protein-ligand interaction detected (PLIP) NI.4: 4 residues within 4Å: Chain B: I.157, W.265 Chain D: I.157, W.265 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Horer, S. et al., The Crystallographic Structure of the Mannitol 2-Dehydrogenase Nadp+ Binary Complex from Agaricus Bisporus. J.Biol.Chem. (2001)

Release Date

2001-06-21

Peptides

NADP-DEPENDENT MANNITOL DEHYDROGENASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

B
J

C
K

D
L

NADP-DEPENDENT MANNITOL DEHYDROGENASE

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