SMTL ID : 1h8l.1

Duck Carboxypeptidase D Domain II in complex with GEMSA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 7 residues within 4Å: Chain A: T.129, N.133, N.137, Y.138, D.139, R.142, D.153 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:R.142

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 4 residues within 4Å: Chain A: F.306, L.308, Q.372, N.374 No protein-ligand interaction detected (PLIP)

1 x GEM: (2-GUANIDINOETHYLMERCAPTO)SUCCINIC ACID(Non-covalent)

GEM.3: 15 residues within 4Å: Chain A: H.71, E.74, R.132, N.141, R.142, H.178, G.179, N.185, D.189, G.243, W.246, Y.247, V.249, E.269 Ligands: ZN.6 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:N.141, A:N.185, A:D.189, A:Y.247, A:Y.247, A:Y.247, A:Y.247 Water bridges: A:R.132 Salt bridges: A:H.71, A:H.71, A:R.132, A:R.132, A:R.142, A:H.178, A:D.189 pi-Cation interactions: A:Y.247

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain A: N.318, T.320 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.320 Water bridges: A:T.320

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 2 residues within 4Å: Chain A: R.289, R.290 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Q.4 Salt bridges: A:R.289, A:R.290

1 x ZN: ZINC ION(Non-covalent)

ZN.6: 4 residues within 4Å: Chain A: H.71, E.74, H.178 Ligands: GEM.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.71, A:E.74, A:E.74, A:H.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aloy, P. et al., The crystal structure of the inhibitor-complexed carboxypeptidase D domain II and the modeling of regulatory carboxypeptidases. J. Biol. Chem. (2001)

Release Date

2002-02-08

Peptides

CARBOXYPEPTIDASE GP180 RESIDUES 503-882: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CARBOXYPEPTIDASE GP180 RESIDUES 503-882

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