SMTL ID : 1h8p.1

Bull seminal plasma PDC-109 fibronectin type II module

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

homo-tetramer

Ligands

8 x PC: PHOSPHOCHOLINE(Non-covalent)

PC.1: 8 residues within 4Å: Chain A: G.87, S.88, M.89, W.90, W.93, Y.100, W.106, Y.108 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:M.89, A:W.90 pi-Cation interactions: A:W.93, A:W.93, A:W.106, A:W.106 PC.2: 2 residues within 4Å: Chain A: R.31, H.41 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.31, A:H.41 PC.3: 6 residues within 4Å: Chain B: Y.30, H.41, G.42, W.47, Y.54, W.58 4 PLIP interactions: 4 interactions with chain B pi-Cation interactions: B:W.47, B:W.47, B:W.58, B:W.58 PC.4: 5 residues within 4Å: Chain B: Y.75, G.87, W.93, Y.100, W.106 4 PLIP interactions: 4 interactions with chain B pi-Cation interactions: B:W.93, B:W.93, B:W.106, B:W.106 PC.5: 8 residues within 4Å: Chain C: G.87, S.88, M.89, W.90, W.93, Y.100, W.106, Y.108 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:M.89, C:W.90, C:Y.108 pi-Cation interactions: C:W.93, C:W.93, C:W.106, C:W.106 PC.6: 2 residues within 4Å: Chain C: R.31, H.41 2 PLIP interactions: 2 interactions with chain C Salt bridges: C:R.31, C:H.41 PC.7: 6 residues within 4Å: Chain D: Y.30, H.41, G.42, W.47, Y.54, W.58 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:Y.30, D:Y.54 pi-Cation interactions: D:W.47, D:W.47, D:W.58, D:W.58 PC.8: 5 residues within 4Å: Chain D: Y.75, G.87, W.93, Y.100, W.106 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:Y.75, D:Y.100 pi-Cation interactions: D:W.93, D:W.93, D:W.106, D:W.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wah, D.A. et al., Sperm Coating Mechanism from the 1.8 A Crystal Structure of Pdc-109-Phosphorylcholine Complex. Structure (2002)

Release Date

2002-04-12

Peptides

SEMINAL PLASMA PROTEIN PDC-109: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

SEMINAL PLASMA PROTEIN PDC-109