SMTL ID : 1ha0.1

HEMAGGLUTININ PRECURSOR HA0

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-trimer

Ligands

6 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA.1: 4 residues within 4Å: Chain A: N.30, T.32, T.310, L.373 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.2: 5 residues within 4Å: Chain A: N.157, T.159 Chain C: S.211, W.214, S.219 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:W.214 NAG-NAG-BMA.6: 4 residues within 4Å: Chain B: N.30, T.32, T.310, L.373 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.7: 5 residues within 4Å: Chain A: S.211, W.214, S.219 Chain B: N.157, T.159 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.214 NAG-NAG-BMA.11: 4 residues within 4Å: Chain C: N.30, T.32, T.310, L.373 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.12: 5 residues within 4Å: Chain B: S.211, W.214, S.219 Chain C: N.157, T.159 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:W.214

3 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-MAN.3: 5 residues within 4Å: Chain A: S.37, N.277, V.289, N.290, E.390 No protein-ligand interaction detected (PLIP) NAG-NAG-MAN.8: 5 residues within 4Å: Chain B: S.37, N.277, V.289, N.290, E.390 No protein-ligand interaction detected (PLIP) NAG-NAG-MAN.13: 5 residues within 4Å: Chain C: S.37, N.277, V.289, N.290, E.390 No protein-ligand interaction detected (PLIP)

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 1 residues within 4Å: Chain A: N.14 No protein-ligand interaction detected (PLIP) NAG.5: 5 residues within 4Å: Chain A: Q.72, N.73, E.111, F.112, I.113 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.73, A:E.111, A:E.111 NAG.9: 1 residues within 4Å: Chain B: N.14 No protein-ligand interaction detected (PLIP) NAG.10: 5 residues within 4Å: Chain B: Q.72, N.73, E.111, F.112, I.113 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.73, B:E.111 NAG.14: 1 residues within 4Å: Chain C: N.14 No protein-ligand interaction detected (PLIP) NAG.15: 5 residues within 4Å: Chain C: Q.72, N.73, E.111, F.112, I.113 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.73, C:E.111, C:E.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, J. et al., Structure of the hemagglutinin precursor cleavage site, a determinant of influenza pathogenicity and the origin of the labile conformation. Cell(Cambridge,Mass.) (1998)

Release Date

1998-10-12

Peptides

PROTEIN (HEMAGGLUTININ PRECURSOR): ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

PROTEIN (HEMAGGLUTININ PRECURSOR)