SMTL ID : 1ha3.1 (1 other biounit)

ELONGATION FACTOR TU IN COMPLEX WITH aurodox

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 17 residues within 4Å: Chain A: H.19, V.20, D.21, H.22, G.23, K.24, T.25, T.26, Y.47, N.136, K.137, D.139, M.140, S.174, A.175, L.176 Ligands: MG.2 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:D.21, A:H.22, A:G.23, A:K.24, A:T.25, A:T.26, A:T.26, A:N.136, A:K.137, A:K.137, A:S.174, A:A.175, A:L.176 Water bridges: A:D.21, A:D.21, A:K.24, A:K.24, A:T.25, A:T.26 Salt bridges: A:K.24, A:D.139

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.25 Ligands: GDP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.25, H2O.1, H2O.2, H2O.10, H2O.10

1 x MAU: N-METHYL KIRROMYCIN(Non-covalent)

MAU.3: 24 residues within 4Å: Chain A: I.93, A.97, R.117, L.121, L.122, R.124, Q.125, V.126, Y.161, E.162, Y.321, K.325, E.326, E.327, G.328, Y.343, R.345, R.385, F.386, A.387, R.389, T.394, G.396, A.397 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:I.93, A:I.93, A:A.97, A:R.117, A:L.121, A:L.122, A:R.124, A:V.126, A:Y.161, A:Y.343, A:A.387, A:T.394 Hydrogen bonds: A:R.124, A:Q.125, A:Y.161, A:Y.161 Water bridges: A:Q.125, A:Y.161, A:R.345, A:R.385, A:R.385, A:F.386, A:G.398

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.4: 5 residues within 4Å: Chain A: V.80, C.82, P.83, N.91, M.92 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vogeley, L. et al., Conformational Change of Elongation Factor TU Induced by Antibiotic Binding: Crystal Structure of the Complex between EF-TU:Gdp and Aurodox. J.Biol.Chem. (2001)

Release Date

2001-05-15

Peptides

ELONGATION FACTOR TU: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ELONGATION FACTOR TU

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