SMTL ID : 1hmo.1 (2 other biounits)

THE STRUCTURE OF DEOXY AND OXY HEMERYTHRIN AT 2.0 ANGSTROMS RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-octamer

Ligands

8 x ACE: ACETYL GROUP(Non-functional Binders)

ACE.1: 2 residues within 4Å: Chain A: Q.60, S.64 No protein-ligand interaction detected (PLIP) ACE.4: 2 residues within 4Å: Chain B: Q.60, S.64 No protein-ligand interaction detected (PLIP) ACE.7: 2 residues within 4Å: Chain C: Q.60, S.64 No protein-ligand interaction detected (PLIP) ACE.10: 2 residues within 4Å: Chain D: Q.60, S.64 No protein-ligand interaction detected (PLIP) ACE.13: 2 residues within 4Å: Chain E: Q.60, S.64 No protein-ligand interaction detected (PLIP) ACE.16: 2 residues within 4Å: Chain F: Q.60, S.64 No protein-ligand interaction detected (PLIP) ACE.19: 2 residues within 4Å: Chain G: Q.60, S.64 No protein-ligand interaction detected (PLIP) ACE.22: 2 residues within 4Å: Chain H: Q.60, S.64 No protein-ligand interaction detected (PLIP)

8 x FEO: MU-OXO-DIIRON(Non-covalent)

FEO.2: 9 residues within 4Å: Chain A: H.25, H.54, F.55, E.58, H.73, H.77, H.101, D.106 Ligands: OXY.3 9 PLIP interactions: 9 interactions with chain A, Metal complexes: A:H.25, A:H.54, A:E.58, A:E.58, A:H.73, A:H.77, A:H.101, A:D.106, A:D.106 FEO.5: 9 residues within 4Å: Chain B: H.25, H.54, F.55, E.58, H.73, H.77, H.101, D.106 Ligands: OXY.6 9 PLIP interactions: 9 interactions with chain B, Metal complexes: B:H.25, B:H.54, B:E.58, B:E.58, B:H.73, B:H.77, B:H.101, B:D.106, B:D.106 FEO.8: 9 residues within 4Å: Chain C: H.25, H.54, F.55, E.58, H.73, H.77, H.101, D.106 Ligands: OXY.9 9 PLIP interactions: 9 interactions with chain C, Metal complexes: C:H.25, C:H.54, C:E.58, C:E.58, C:H.73, C:H.77, C:H.101, C:D.106, C:D.106 FEO.11: 9 residues within 4Å: Chain D: H.25, H.54, F.55, E.58, H.73, H.77, H.101, D.106 Ligands: OXY.12 9 PLIP interactions: 9 interactions with chain D, Metal complexes: D:H.25, D:H.54, D:E.58, D:E.58, D:H.73, D:H.77, D:H.101, D:D.106, D:D.106 FEO.14: 9 residues within 4Å: Chain E: H.25, H.54, F.55, E.58, H.73, H.77, H.101, D.106 Ligands: OXY.15 9 PLIP interactions: 9 interactions with chain E, Metal complexes: E:H.25, E:H.54, E:E.58, E:E.58, E:H.73, E:H.77, E:H.101, E:D.106, E:D.106 FEO.17: 9 residues within 4Å: Chain F: H.25, H.54, F.55, E.58, H.73, H.77, H.101, D.106 Ligands: OXY.18 9 PLIP interactions: 9 interactions with chain F, Metal complexes: F:H.25, F:H.54, F:E.58, F:E.58, F:H.73, F:H.77, F:H.101, F:D.106, F:D.106 FEO.20: 9 residues within 4Å: Chain G: H.25, H.54, F.55, E.58, H.73, H.77, H.101, D.106 Ligands: OXY.21 9 PLIP interactions: 9 interactions with chain G, Metal complexes: G:H.25, G:H.54, G:E.58, G:E.58, G:H.73, G:H.77, G:H.101, G:D.106, G:D.106 FEO.23: 9 residues within 4Å: Chain H: H.25, H.54, F.55, E.58, H.73, H.77, H.101, D.106 Ligands: OXY.24 9 PLIP interactions: 9 interactions with chain H, Metal complexes: H:H.25, H:H.54, H:E.58, H:E.58, H:H.73, H:H.77, H:H.101, H:D.106, H:D.106

8 x OXY: OXYGEN MOLECULE(Non-covalent)

OXY.3: 10 residues within 4Å: Chain A: H.25, L.28, H.54, F.55, W.97, L.98, H.101, I.102, D.106 Ligands: FEO.2 No protein-ligand interaction detected (PLIP) OXY.6: 10 residues within 4Å: Chain B: H.25, L.28, H.54, F.55, W.97, L.98, H.101, I.102, D.106 Ligands: FEO.5 No protein-ligand interaction detected (PLIP) OXY.9: 10 residues within 4Å: Chain C: H.25, L.28, H.54, F.55, W.97, L.98, H.101, I.102, D.106 Ligands: FEO.8 No protein-ligand interaction detected (PLIP) OXY.12: 10 residues within 4Å: Chain D: H.25, L.28, H.54, F.55, W.97, L.98, H.101, I.102, D.106 Ligands: FEO.11 No protein-ligand interaction detected (PLIP) OXY.15: 10 residues within 4Å: Chain E: H.25, L.28, H.54, F.55, W.97, L.98, H.101, I.102, D.106 Ligands: FEO.14 No protein-ligand interaction detected (PLIP) OXY.18: 10 residues within 4Å: Chain F: H.25, L.28, H.54, F.55, W.97, L.98, H.101, I.102, D.106 Ligands: FEO.17 No protein-ligand interaction detected (PLIP) OXY.21: 10 residues within 4Å: Chain G: H.25, L.28, H.54, F.55, W.97, L.98, H.101, I.102, D.106 Ligands: FEO.20 No protein-ligand interaction detected (PLIP) OXY.24: 10 residues within 4Å: Chain H: H.25, L.28, H.54, F.55, W.97, L.98, H.101, I.102, D.106 Ligands: FEO.23 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Holmes, M.A. et al., Structures of deoxy and oxy hemerythrin at 2.0 A resolution. J.Mol.Biol. (1991)

Release Date

1992-01-15

Peptides

HEMERYTHRIN: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

HEMERYTHRIN

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